Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
VTA1Q9NP79 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
VTA1Q9NP79 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
VTA1Q9NP79 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.43■□□□□ 0.38
VTA1Q9NP79 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 MIR1202-201ENST00000408529 83 ntBASIC17.42■□□□□ 0.38
VTA1Q9NP79 GPAA1P2-201ENST00000417923 928 ntBASIC17.42■□□□□ 0.38
VTA1Q9NP79 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 AC006033.1-201ENST00000440505 426 ntBASIC17.42■□□□□ 0.38
VTA1Q9NP79 AL590640.2-201ENST00000457038 527 ntBASIC17.42■□□□□ 0.38
VTA1Q9NP79 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 AP003096.1-203ENST00000564469 563 ntTSL 3 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
VTA1Q9NP79 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
VTA1Q9NP79 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 B9D1-203ENST00000395615 805 ntTSL 3 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 HNRNPA1P48-202ENST00000565308 961 ntBASIC17.41■□□□□ 0.38
VTA1Q9NP79 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.41■□□□□ 0.38
VTA1Q9NP79 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VTA1Q9NP79 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VTA1Q9NP79 AL645937.2-201ENST00000396808 931 ntBASIC17.4■□□□□ 0.38
VTA1Q9NP79 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VTA1Q9NP79 BCYRN1-201ENST00000418539 200 ntBASIC17.4■□□□□ 0.38
VTA1Q9NP79 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms