Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC13.99□□□□□ -0.17
MMP28Q9H239 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC13.99□□□□□ -0.17
MMP28Q9H239 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.99□□□□□ -0.17
MMP28Q9H239 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 PC-214ENST00000628663 1470 ntTSL 5 BASIC13.99□□□□□ -0.17
MMP28Q9H239 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
MMP28Q9H239 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 KRT8P39-201ENST00000396270 1433 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 AC092127.1-201ENST00000567093 3455 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 AL590787.1-201ENST00000568856 1315 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
MMP28Q9H239 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 RPS2P28-201ENST00000314255 741 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
MMP28Q9H239 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 KRT18P67-201ENST00000432816 1264 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 RPS2P1-201ENST00000434010 821 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.98□□□□□ -0.17
MMP28Q9H239 RNPS1P1-201ENST00000507437 918 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC13.98□□□□□ -0.17
MMP28Q9H239 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC13.98□□□□□ -0.17
MMP28Q9H239 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC13.98□□□□□ -0.17
MMP28Q9H239 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.98□□□□□ -0.17
MMP28Q9H239 PAM16-208ENST00000573553 722 ntTSL 2 BASIC13.98□□□□□ -0.17
MMP28Q9H239 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC13.98□□□□□ -0.17
MMP28Q9H239 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.98□□□□□ -0.17
MMP28Q9H239 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
MMP28Q9H239 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
MMP28Q9H239 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
MMP28Q9H239 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
MMP28Q9H239 BEND3P1-201ENST00000421591 1944 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 AL928921.2-201ENST00000641325 2442 ntBASIC13.98□□□□□ -0.17
MMP28Q9H239 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
MMP28Q9H239 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC13.97□□□□□ -0.17
MMP28Q9H239 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
MMP28Q9H239 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC13.97□□□□□ -0.17
MMP28Q9H239 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.97□□□□□ -0.17
MMP28Q9H239 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
MMP28Q9H239 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC13.97□□□□□ -0.17
MMP28Q9H239 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 RNA5SP419-201ENST00000515908 135 ntBASIC13.97□□□□□ -0.17
MMP28Q9H239 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
MMP28Q9H239 AL671883.3-201ENST00000603274 991 ntBASIC13.97□□□□□ -0.17
MMP28Q9H239 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.97□□□□□ -0.17
MMP28Q9H239 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
MMP28Q9H239 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC13.97□□□□□ -0.17
MMP28Q9H239 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
MMP28Q9H239 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.97□□□□□ -0.17
MMP28Q9H239 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
MMP28Q9H239 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms