Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 ISCA2P1-201ENST00000425548 448 ntBASIC15.19■□□□□ 0.02
VPS13AQ96RL7 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.19■□□□□ 0.02
VPS13AQ96RL7 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 DNM1P51-201ENST00000558149 522 ntBASIC15.19■□□□□ 0.02
VPS13AQ96RL7 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC15.19■□□□□ 0.02
VPS13AQ96RL7 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AC013726.1-201ENST00000563747 2285 ntBASIC15.18■□□□□ 0.02
VPS13AQ96RL7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AL136309.1-201ENST00000403917 691 ntBASIC15.18■□□□□ 0.02
VPS13AQ96RL7 PAQR9-AS1-203ENST00000497652 516 ntTSL 3 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AL161773.1-201ENST00000624845 863 ntBASIC15.18■□□□□ 0.02
VPS13AQ96RL7 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AL162426.1-201ENST00000624141 743 ntBASIC15.18■□□□□ 0.02
VPS13AQ96RL7 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 ACTBP7-201ENST00000418351 1124 ntBASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 HKR1-225ENST00000592168 566 ntTSL 4 BASIC15.18■□□□□ 0.02
VPS13AQ96RL7 AC242376.2-201ENST00000619355 883 ntBASIC15.18■□□□□ 0.02
VPS13AQ96RL7 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 MIR4783-201ENST00000580343 82 ntBASIC15.17■□□□□ 0.02
VPS13AQ96RL7 AC005324.6-201ENST00000587972 613 ntBASIC15.17■□□□□ 0.02
VPS13AQ96RL7 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 AL512430.1-201ENST00000392575 860 ntBASIC15.17■□□□□ 0.02
VPS13AQ96RL7 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 AL132994.2-201ENST00000603120 687 ntBASIC15.17■□□□□ 0.02
VPS13AQ96RL7 AC005618.3-201ENST00000624928 458 ntBASIC15.17■□□□□ 0.02
VPS13AQ96RL7 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
VPS13AQ96RL7 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
VPS13AQ96RL7 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms