Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
LINC00477Q96M19 CYP4F24P-201ENST00000586049 1580 ntBASIC11.84□□□□□ -0.51
LINC00477Q96M19 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC11.83□□□□□ -0.51
LINC00477Q96M19 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC11.83□□□□□ -0.51
LINC00477Q96M19 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC11.83□□□□□ -0.51
LINC00477Q96M19 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.51
LINC00477Q96M19 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
LINC00477Q96M19 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC11.83□□□□□ -0.51
LINC00477Q96M19 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC11.83□□□□□ -0.51
LINC00477Q96M19 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 AL136982.4-201ENST00000437689 1740 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 KRT8P44-201ENST00000441609 1350 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 AL136379.1-201ENST00000623471 2642 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 PTMS-202ENST00000389462 773 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 FAM58CP-201ENST00000435741 640 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 EEF1DP4-201ENST00000446006 880 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 AC243562.1-201ENST00000560672 389 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 AC140113.2-201ENST00000604370 208 ntBASIC11.83□□□□□ -0.52
LINC00477Q96M19 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
LINC00477Q96M19 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC11.83□□□□□ -0.52
LINC00477Q96M19 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC11.82□□□□□ -0.52
LINC00477Q96M19 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC11.82□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms