Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SNED1Q8TER0 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 DPM3-202ENST00000368399 517 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 MIR769-201ENST00000390225 118 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 AL645937.2-201ENST00000396808 931 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 NUP210P1-202ENST00000504322 710 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 AC100850.1-201ENST00000506768 649 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AP000346.4-201ENST00000614827 381 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 ANKRD30BP2-201ENST00000435744 1610 ntBASIC18.78■□□□□ 0.6
SNED1Q8TER0 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
SNED1Q8TER0 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SNED1Q8TER0 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 RPS15-201ENST00000233609 534 ntTSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 AC007274.2-201ENST00000421675 662 ntBASIC18.77■□□□□ 0.6
SNED1Q8TER0 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 AC013355.1-201ENST00000562625 723 ntBASIC18.77■□□□□ 0.6
SNED1Q8TER0 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 RPS15-205ENST00000586686 562 ntTSL 5 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 RPS15-208ENST00000591804 711 ntTSL 5 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.77■□□□□ 0.6
SNED1Q8TER0 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SNED1Q8TER0 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
SNED1Q8TER0 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNED1Q8TER0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNED1Q8TER0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNED1Q8TER0 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNED1Q8TER0 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SNED1Q8TER0 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SNED1Q8TER0 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC18.77■□□□□ 0.59
SNED1Q8TER0 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 RN7SL11P-201ENST00000471305 293 ntBASIC18.76■□□□□ 0.59
SNED1Q8TER0 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 CFL1-214ENST00000534769 758 ntTSL 2 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.76■□□□□ 0.59
SNED1Q8TER0 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SNED1Q8TER0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms