Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 AC093813.1-201ENST00000605066 256 ntBASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 BLK-205ENST00000529894 2017 ntTSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RNFT1Q5M7Z0 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 FAM86MP-201ENST00000340703 885 ntBASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 AP001582.1-201ENST00000525856 295 ntBASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
RNFT1Q5M7Z0 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 AC112504.1-201ENST00000623415 1841 ntBASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
RNFT1Q5M7Z0 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 ACKR1-201ENST00000368121 1240 ntBASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 BRF1-202ENST00000379932 884 ntTSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 AC022137.2-201ENST00000503482 481 ntBASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 GNRHR2-203ENST00000581100 1187 ntBASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 MIR4538-201ENST00000581377 78 ntBASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RNFT1Q5M7Z0 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 147.9 ms