Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH1Q08174 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH1Q08174 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PCDH1Q08174 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH1Q08174 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC15.19■□□□□ 0.02
PCDH1Q08174 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PCDH1Q08174 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH1Q08174 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PCDH1Q08174 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.18■□□□□ 0.02
PCDH1Q08174 TUBB3P1-201ENST00000405796 1332 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
PCDH1Q08174 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
PCDH1Q08174 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDH1Q08174 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDH1Q08174 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 AC140878.1-201ENST00000565277 250 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.18■□□□□ 0.02
PCDH1Q08174 TEX28P1-201ENST00000613479 1221 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 TEX28P2-201ENST00000617764 1221 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 Z92544.3-201ENST00000624747 417 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 AC012183.1-201ENST00000625197 499 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.18■□□□□ 0.02
PCDH1Q08174 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 HYMAI-201ENST00000635591 3347 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 AC023157.3-201ENST00000619086 2088 ntBASIC15.18■□□□□ 0.02
PCDH1Q08174 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.18■□□□□ 0.02
PCDH1Q08174 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
PCDH1Q08174 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 RPL13P2-201ENST00000440687 659 ntBASIC15.17■□□□□ 0.02
PCDH1Q08174 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH1Q08174 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.17■□□□□ 0.02
PCDH1Q08174 AL138828.2-201ENST00000615812 383 ntBASIC15.17■□□□□ 0.02
PCDH1Q08174 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.17■□□□□ 0.02
PCDH1Q08174 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
PCDH1Q08174 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
PCDH1Q08174 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
PCDH1Q08174 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
PCDH1Q08174 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms