Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGCS2P54868 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.97■□□□□ 0.47
HMGCS2P54868 AC104982.3-201ENST00000581995 514 ntBASIC17.97■□□□□ 0.47
HMGCS2P54868 EEF1DP1-201ENST00000585891 896 ntBASIC17.97■□□□□ 0.47
HMGCS2P54868 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC17.97■□□□□ 0.47
HMGCS2P54868 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGCS2P54868 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
HMGCS2P54868 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 AC069224.1-201ENST00000566372 1715 ntBASIC17.97■□□□□ 0.47
HMGCS2P54868 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
HMGCS2P54868 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
HMGCS2P54868 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.97■□□□□ 0.47
HMGCS2P54868 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.97■□□□□ 0.47
HMGCS2P54868 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC17.97■□□□□ 0.47
HMGCS2P54868 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
HMGCS2P54868 PCDH8P1-201ENST00000428983 2773 ntBASIC17.96■□□□□ 0.47
HMGCS2P54868 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGCS2P54868 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGCS2P54868 CALR4P-201ENST00000431943 946 ntBASIC17.96■□□□□ 0.47
HMGCS2P54868 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGCS2P54868 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGCS2P54868 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGCS2P54868 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGCS2P54868 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGCS2P54868 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGCS2P54868 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.96■□□□□ 0.47
HMGCS2P54868 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
HMGCS2P54868 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGCS2P54868 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 AL354989.2-201ENST00000435838 1540 ntBASIC17.96■□□□□ 0.47
HMGCS2P54868 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 HARS-202ENST00000415192 1401 ntTSL 2 BASIC17.96■□□□□ 0.47
HMGCS2P54868 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
HMGCS2P54868 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.96■□□□□ 0.47
HMGCS2P54868 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.96■□□□□ 0.47
HMGCS2P54868 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
HMGCS2P54868 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.46
HMGCS2P54868 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
HMGCS2P54868 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 AC015818.8-201ENST00000587907 1519 ntBASIC17.95■□□□□ 0.46
HMGCS2P54868 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
HMGCS2P54868 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGCS2P54868 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGCS2P54868 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGCS2P54868 ARTN-209ENST00000479128 471 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGCS2P54868 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.95■□□□□ 0.46
HMGCS2P54868 AP006547.1-201ENST00000563435 692 ntBASIC17.95■□□□□ 0.46
HMGCS2P54868 CYGB-203ENST00000589145 788 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGCS2P54868 AL096828.3-201ENST00000615354 462 ntBASIC17.95■□□□□ 0.46
HMGCS2P54868 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.95■□□□□ 0.46
HMGCS2P54868 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 AC022188.1-201ENST00000620960 1664 ntBASIC17.95■□□□□ 0.46
HMGCS2P54868 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
HMGCS2P54868 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC17.95■□□□□ 0.46
HMGCS2P54868 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 AMT-224ENST00000635808 1610 ntTSL 5 BASIC17.94■□□□□ 0.46
HMGCS2P54868 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.94■□□□□ 0.46
HMGCS2P54868 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
HMGCS2P54868 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC17.94■□□□□ 0.46
HMGCS2P54868 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms