Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC18.41■□□□□ 0.54
COL4A5P29400 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 MTHFR-217ENST00000641820 1569 ntBASIC18.41■□□□□ 0.54
COL4A5P29400 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 RPSAP31-201ENST00000416648 895 ntBASIC18.41■□□□□ 0.54
COL4A5P29400 VDAC1P1-201ENST00000439229 848 ntBASIC18.41■□□□□ 0.54
COL4A5P29400 AC098935.1-201ENST00000446057 611 ntBASIC18.41■□□□□ 0.54
COL4A5P29400 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC18.41■□□□□ 0.54
COL4A5P29400 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL4A5P29400 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.41■□□□□ 0.54
COL4A5P29400 MEG3_2.1-201ENST00000611456 105 ntBASIC18.41■□□□□ 0.54
COL4A5P29400 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 E2F3P2-201ENST00000447755 1422 ntBASIC18.4■□□□□ 0.54
COL4A5P29400 AL157791.1-201ENST00000553667 1699 ntBASIC18.4■□□□□ 0.54
COL4A5P29400 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 PFN2-202ENST00000423691 911 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.4■□□□□ 0.54
COL4A5P29400 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC18.4■□□□□ 0.54
COL4A5P29400 AC006453.1-201ENST00000636037 1257 ntBASIC18.4■□□□□ 0.54
COL4A5P29400 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
COL4A5P29400 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.4■□□□□ 0.54
COL4A5P29400 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC18.4■□□□□ 0.54
COL4A5P29400 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL4A5P29400 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL4A5P29400 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.39■□□□□ 0.54
COL4A5P29400 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL4A5P29400 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.39■□□□□ 0.54
COL4A5P29400 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC18.39■□□□□ 0.54
COL4A5P29400 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
COL4A5P29400 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL4A5P29400 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC18.39■□□□□ 0.53
COL4A5P29400 RCC2P8-201ENST00000502779 1035 ntBASIC18.39■□□□□ 0.53
COL4A5P29400 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 AC009779.1-201ENST00000551138 283 ntBASIC18.39■□□□□ 0.53
COL4A5P29400 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
COL4A5P29400 AC135983.4-201ENST00000564116 1262 ntBASIC18.39■□□□□ 0.53
COL4A5P29400 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL4A5P29400 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.39■□□□□ 0.53
COL4A5P29400 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
COL4A5P29400 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 MST1L-201ENST00000442552 2185 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL4A5P29400 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC18.38■□□□□ 0.53
COL4A5P29400 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL4A5P29400 NOC2LP1-201ENST00000450578 752 ntBASIC18.38■□□□□ 0.53
COL4A5P29400 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms