Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC17.91■□□□□ 0.46
SMARCA1P28370 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SMARCA1P28370 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SMARCA1P28370 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.91■□□□□ 0.46
SMARCA1P28370 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 AC105917.1-201ENST00000506637 2539 ntBASIC17.9■□□□□ 0.46
SMARCA1P28370 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SMARCA1P28370 EDF1-203ENST00000371649 790 ntTSL 2 BASIC17.9■□□□□ 0.46
SMARCA1P28370 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 AL645937.2-201ENST00000396808 931 ntBASIC17.9■□□□□ 0.46
SMARCA1P28370 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 ACTG1P3-201ENST00000431775 1114 ntBASIC17.9■□□□□ 0.46
SMARCA1P28370 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC17.9■□□□□ 0.46
SMARCA1P28370 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC17.9■□□□□ 0.46
SMARCA1P28370 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.9■□□□□ 0.46
SMARCA1P28370 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.9■□□□□ 0.46
SMARCA1P28370 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC17.9■□□□□ 0.46
SMARCA1P28370 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC17.9■□□□□ 0.46
SMARCA1P28370 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SMARCA1P28370 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 AC093525.8-201ENST00000624099 1342 ntBASIC17.9■□□□□ 0.46
SMARCA1P28370 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC17.9■□□□□ 0.46
SMARCA1P28370 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SMARCA1P28370 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SMARCA1P28370 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.89■□□□□ 0.46
SMARCA1P28370 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 AGK-211ENST00000629555 2765 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC17.89■□□□□ 0.45
SMARCA1P28370 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SMARCA1P28370 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC17.89■□□□□ 0.45
SMARCA1P28370 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 NUS1P3-201ENST00000423502 862 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 GHSR-202ENST00000427970 912 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC17.89■□□□□ 0.45
SMARCA1P28370 AC004066.1-201ENST00000502488 802 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SMARCA1P28370 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC17.89■□□□□ 0.45
SMARCA1P28370 RPSAP52-203ENST00000622976 1023 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 CU634019.7-201ENST00000624153 1185 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 FP236241.2-201ENST00000624906 1185 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 PRSS30P-206ENST00000641773 873 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 AC112693.3-201ENST00000624819 1983 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 AC022532.1-201ENST00000624563 1728 ntBASIC17.89■□□□□ 0.45
SMARCA1P28370 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.89■□□□□ 0.45
SMARCA1P28370 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.89■□□□□ 0.45
SMARCA1P28370 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.89■□□□□ 0.45
SMARCA1P28370 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SMARCA1P28370 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.88■□□□□ 0.45
SMARCA1P28370 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC17.88■□□□□ 0.45
SMARCA1P28370 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SMARCA1P28370 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms