Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
COL5A1P20908 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.78□□□□□ -0.04
COL5A1P20908 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 AC104457.1-201ENST00000401024 814 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 MAGEA5-201ENST00000446757 942 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 FTLP1-201ENST00000449155 526 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 RN7SL720P-201ENST00000488178 304 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC14.78□□□□□ -0.04
COL5A1P20908 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.78□□□□□ -0.04
COL5A1P20908 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC14.78□□□□□ -0.04
COL5A1P20908 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC14.78□□□□□ -0.04
COL5A1P20908 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
COL5A1P20908 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL5A1P20908 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
COL5A1P20908 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC14.77□□□□□ -0.04
COL5A1P20908 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL5A1P20908 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
COL5A1P20908 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.77□□□□□ -0.04
COL5A1P20908 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
COL5A1P20908 PCDH8P1-201ENST00000428983 2773 ntBASIC14.77□□□□□ -0.04
COL5A1P20908 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC14.77□□□□□ -0.04
COL5A1P20908 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 MIR33B-201ENST00000385104 96 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC14.77□□□□□ -0.05
COL5A1P20908 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC14.77□□□□□ -0.05
COL5A1P20908 LDHBP1-201ENST00000455730 1119 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 AC100850.1-201ENST00000506768 649 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 SAMD11P1-201ENST00000571429 661 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC14.77□□□□□ -0.05
COL5A1P20908 AC026740.1-201ENST00000607068 791 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 AC022748.3-201ENST00000621828 275 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC14.77□□□□□ -0.05
COL5A1P20908 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL5A1P20908 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
COL5A1P20908 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.77□□□□□ -0.05
COL5A1P20908 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.77□□□□□ -0.05
COL5A1P20908 AC007787.1-201ENST00000588095 1583 ntBASIC14.77□□□□□ -0.05
COL5A1P20908 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
COL5A1P20908 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC14.76□□□□□ -0.05
COL5A1P20908 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 OR10B1P-201ENST00000601666 907 ntBASIC14.76□□□□□ -0.05
COL5A1P20908 AL023803.2-201ENST00000620080 638 ntBASIC14.76□□□□□ -0.05
COL5A1P20908 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 AL365203.3-201ENST00000609742 2057 ntBASIC14.76□□□□□ -0.05
COL5A1P20908 AC008132.1-202ENST00000342005 1389 ntBASIC14.76□□□□□ -0.05
COL5A1P20908 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC14.76□□□□□ -0.05
COL5A1P20908 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 TUBBP5-203ENST00000508529 1334 ntBASIC14.76□□□□□ -0.05
COL5A1P20908 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
COL5A1P20908 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.76□□□□□ -0.05
COL5A1P20908 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.76□□□□□ -0.05
COL5A1P20908 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC14.76□□□□□ -0.05
COL5A1P20908 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.76□□□□□ -0.05
COL5A1P20908 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
COL5A1P20908 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms