Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
VPS4BO75351 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 AC007274.1-201ENST00000439805 662 ntBASIC15.49■□□□□ 0.07
VPS4BO75351 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 KRT8P48-201ENST00000515599 1220 ntBASIC15.49■□□□□ 0.07
VPS4BO75351 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.49■□□□□ 0.07
VPS4BO75351 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC15.49■□□□□ 0.07
VPS4BO75351 AC024267.1-201ENST00000582320 895 ntBASIC15.49■□□□□ 0.07
VPS4BO75351 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 AP001059.3-201ENST00000619053 235 ntBASIC15.49■□□□□ 0.07
VPS4BO75351 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
VPS4BO75351 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.49■□□□□ 0.07
VPS4BO75351 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VPS4BO75351 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
VPS4BO75351 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.48■□□□□ 0.07
VPS4BO75351 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 OR8S1-201ENST00000310194 1080 ntBASIC15.48■□□□□ 0.07
VPS4BO75351 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 SLC25A39P2-201ENST00000537614 270 ntBASIC15.48■□□□□ 0.07
VPS4BO75351 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.48■□□□□ 0.07
VPS4BO75351 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS4BO75351 AL390754.1-201ENST00000619088 582 ntBASIC15.48■□□□□ 0.07
VPS4BO75351 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.48■□□□□ 0.07
VPS4BO75351 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.48■□□□□ 0.07
VPS4BO75351 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
VPS4BO75351 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VPS4BO75351 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.48■□□□□ 0.07
VPS4BO75351 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS4BO75351 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
VPS4BO75351 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.47■□□□□ 0.07
VPS4BO75351 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 RBPMS2P1-201ENST00000437762 623 ntBASIC15.47■□□□□ 0.07
VPS4BO75351 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS4BO75351 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.47■□□□□ 0.07
VPS4BO75351 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.47■□□□□ 0.07
VPS4BO75351 AC098859.1-201ENST00000502915 1238 ntBASIC15.47■□□□□ 0.07
VPS4BO75351 AC079140.1-201ENST00000508039 487 ntBASIC15.47■□□□□ 0.07
VPS4BO75351 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.47■□□□□ 0.07
VPS4BO75351 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VPS4BO75351 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC15.47■□□□□ 0.07
VPS4BO75351 AC140878.1-201ENST00000565277 250 ntBASIC15.47■□□□□ 0.07
VPS4BO75351 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms