Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AL161773.1-201ENST00000624845 863 ntBASIC21.56■■□□□ 1.04
NPHP4O75161 AL132780.4-201ENST00000624870 1135 ntBASIC21.56■■□□□ 1.04
NPHP4O75161 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC21.56■■□□□ 1.04
NPHP4O75161 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC21.56■■□□□ 1.04
NPHP4O75161 ME2P1-201ENST00000426028 1970 ntBASIC21.56■■□□□ 1.04
NPHP4O75161 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
NPHP4O75161 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NPHP4O75161 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
NPHP4O75161 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
NPHP4O75161 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC21.55■■□□□ 1.04
NPHP4O75161 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC21.55■■□□□ 1.04
NPHP4O75161 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP4O75161 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 AC018463.1-201ENST00000456674 917 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 NDUFS6P1-201ENST00000485187 316 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 DUX4L47-201ENST00000566374 394 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 SAMD11P1-201ENST00000571429 661 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 FKBP4P6-201ENST00000457486 1332 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
NPHP4O75161 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC21.55■■□□□ 1.04
NPHP4O75161 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 MIR648-201ENST00000385046 94 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 IGF1-205ENST00000424202 612 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 FAU-202ENST00000434372 533 ntTSL 2 BASIC21.55■■□□□ 1.04
NPHP4O75161 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC21.55■■□□□ 1.04
NPHP4O75161 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC21.55■■□□□ 1.04
NPHP4O75161 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC21.55■■□□□ 1.04
NPHP4O75161 AC008805.1-201ENST00000590892 364 ntBASIC21.55■■□□□ 1.04
NPHP4O75161 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NPHP4O75161 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NPHP4O75161 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP4O75161 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP4O75161 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NPHP4O75161 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP4O75161 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC21.54■■□□□ 1.04
NPHP4O75161 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP4O75161 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NPHP4O75161 AK6-201ENST00000380818 1183 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP4O75161 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC21.54■■□□□ 1.04
NPHP4O75161 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC21.54■■□□□ 1.04
NPHP4O75161 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC21.54■■□□□ 1.04
NPHP4O75161 RN7SL596P-201ENST00000582123 288 ntBASIC21.54■■□□□ 1.04
NPHP4O75161 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC21.54■■□□□ 1.04
NPHP4O75161 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC21.54■■□□□ 1.04
NPHP4O75161 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NPHP4O75161 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC21.53■■□□□ 1.04
NPHP4O75161 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.53■■□□□ 1.04
NPHP4O75161 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 KRT8P21-201ENST00000430398 1491 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP4O75161 AC005332.8-201ENST00000622750 2735 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
NPHP4O75161 MBLAC2-202ENST00000514906 1936 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC21.53■■□□□ 1.04
NPHP4O75161 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
NPHP4O75161 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.53■■□□□ 1.04
NPHP4O75161 HLA-K-203ENST00000430151 1046 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 AC078875.1-201ENST00000431907 724 ntBASIC21.53■■□□□ 1.04
NPHP4O75161 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC21.53■■□□□ 1.04
NPHP4O75161 KLF2P1-201ENST00000447438 1042 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms