Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 ANKRD19P-201ENST00000338192 862 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AC074338.1-201ENST00000416825 156 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AL442647.2-201ENST00000429864 857 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AL162726.2-201ENST00000438986 1017 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 TARDBPP1-201ENST00000442013 1203 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AC133539.2-201ENST00000604757 467 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 AC018665.1-201ENST00000622927 1362 ntBASIC15.75■□□□□ 0.11
TM9SF3Q9HD45 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 AC233724.13-201ENST00000598383 410 ntBASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 CU634019.7-201ENST00000624153 1185 ntBASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 FP236241.2-201ENST00000624906 1185 ntBASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 BNIP3P1-202ENST00000550043 1585 ntBASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.74■□□□□ 0.11
TM9SF3Q9HD45 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms