Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRIM56Q9BRZ2 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 AC112693.3-201ENST00000624819 1983 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 LOX-206ENST00000639739 1626 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 MIR346-201ENST00000362234 95 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 YBX2P1-201ENST00000394192 760 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 MCCD1P2-201ENST00000423228 335 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 AC040169.1-201ENST00000565382 521 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 AC026120.1-201ENST00000611536 926 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 CITED2-204ENST00000618718 901 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 TMBIM7P-203ENST00000641617 1718 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 PCDHA3-202ENST00000532566 4594 ntBASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC16.13■□□□□ 0.17
TRIM56Q9BRZ2 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 AC097376.2-205ENST00000610159 5334 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 UPF3AP3-201ENST00000420996 769 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SPDYE11-202ENST00000450699 704 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 AC069335.1-201ENST00000489972 472 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SLC25A39P2-201ENST00000537614 270 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SPDYE9P-201ENST00000570642 692 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SPDYE10P-202ENST00000612005 668 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SPDYE8P-202ENST00000612377 668 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 OR2I1P-209ENST00000641730 5365 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 C18orf15-201ENST00000623680 2534 ntBASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.12■□□□□ 0.17
TRIM56Q9BRZ2 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TRIM56Q9BRZ2 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms