Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
NUP54Q7Z3B4 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 MRPS18AP1-201ENST00000414458 589 ntBASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 AC074044.1-201ENST00000609673 707 ntBASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
NUP54Q7Z3B4 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 AC022532.1-201ENST00000624563 1728 ntBASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
NUP54Q7Z3B4 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 AC046158.3-201ENST00000624947 2558 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 AC114501.2-201ENST00000439631 535 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 TARDBPP1-201ENST00000442013 1203 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 TSPY16P-201ENST00000449843 468 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 HNRNPUP1-201ENST00000554987 333 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 AL109936.8-201ENST00000641772 604 ntBASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms