Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 AJ011932.1-201ENST00000621707 465 ntBASIC14.09□□□□□ -0.15
H3F3AP84243 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 AC020658.6-201ENST00000623564 1870 ntBASIC14.09□□□□□ -0.15
H3F3AP84243 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
H3F3AP84243 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.09□□□□□ -0.15
H3F3AP84243 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
H3F3AP84243 AC127383.1-201ENST00000444697 1800 ntBASIC14.08□□□□□ -0.15
H3F3AP84243 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
H3F3AP84243 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.15
H3F3AP84243 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.08□□□□□ -0.15
H3F3AP84243 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.15
H3F3AP84243 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
H3F3AP84243 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.08□□□□□ -0.15
H3F3AP84243 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.08□□□□□ -0.15
H3F3AP84243 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC14.08□□□□□ -0.16
H3F3AP84243 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.08□□□□□ -0.16
H3F3AP84243 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
H3F3AP84243 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.08□□□□□ -0.16
H3F3AP84243 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.08□□□□□ -0.16
H3F3AP84243 KRT18P64-201ENST00000434946 1219 ntBASIC14.08□□□□□ -0.16
H3F3AP84243 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.08□□□□□ -0.16
H3F3AP84243 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.08□□□□□ -0.16
H3F3AP84243 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.08□□□□□ -0.16
H3F3AP84243 AL096865.1-201ENST00000606796 927 ntBASIC14.08□□□□□ -0.16
H3F3AP84243 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.08□□□□□ -0.16
H3F3AP84243 AF228730.6-201ENST00000641497 218 ntBASIC14.08□□□□□ -0.16
H3F3AP84243 AC084121.3-201ENST00000641716 218 ntBASIC14.08□□□□□ -0.16
H3F3AP84243 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
H3F3AP84243 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
H3F3AP84243 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
H3F3AP84243 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.08□□□□□ -0.16
H3F3AP84243 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
H3F3AP84243 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.07□□□□□ -0.16
H3F3AP84243 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
H3F3AP84243 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC14.07□□□□□ -0.16
H3F3AP84243 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.07□□□□□ -0.16
H3F3AP84243 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.07□□□□□ -0.16
H3F3AP84243 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 AC135586.1-201ENST00000539323 574 ntBASIC14.07□□□□□ -0.16
H3F3AP84243 SPCS2P1-201ENST00000561636 679 ntBASIC14.07□□□□□ -0.16
H3F3AP84243 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
H3F3AP84243 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.07□□□□□ -0.16
H3F3AP84243 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.07□□□□□ -0.16
H3F3AP84243 AC090616.6-203ENST00000579186 1945 ntBASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms