Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 AC010328.2-201ENST00000597698 1111 ntBASIC18.39■□□□□ 0.53
RHBDL3P58872 AC138951.2-201ENST00000623455 1161 ntBASIC18.39■□□□□ 0.53
RHBDL3P58872 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDL3P58872 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDL3P58872 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDL3P58872 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
RHBDL3P58872 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.39■□□□□ 0.53
RHBDL3P58872 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDL3P58872 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
RHBDL3P58872 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RHBDL3P58872 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
RHBDL3P58872 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.38■□□□□ 0.53
RHBDL3P58872 RNA5SP486-201ENST00000515961 83 ntBASIC18.38■□□□□ 0.53
RHBDL3P58872 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.38■□□□□ 0.53
RHBDL3P58872 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 RN7SL219P-201ENST00000582872 296 ntBASIC18.38■□□□□ 0.53
RHBDL3P58872 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC18.38■□□□□ 0.53
RHBDL3P58872 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC18.38■□□□□ 0.53
RHBDL3P58872 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.38■□□□□ 0.53
RHBDL3P58872 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.38■□□□□ 0.53
RHBDL3P58872 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RHBDL3P58872 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.38■□□□□ 0.53
RHBDL3P58872 AL391005.1-201ENST00000623953 2435 ntBASIC18.38■□□□□ 0.53
RHBDL3P58872 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 CICP13-201ENST00000422015 2789 ntBASIC18.37■□□□□ 0.53
RHBDL3P58872 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RHBDL3P58872 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 B9D1-203ENST00000395615 805 ntTSL 3 BASIC18.37■□□□□ 0.53
RHBDL3P58872 AL139094.1-201ENST00000405549 1188 ntBASIC18.37■□□□□ 0.53
RHBDL3P58872 NUS1P3-201ENST00000423502 862 ntBASIC18.37■□□□□ 0.53
RHBDL3P58872 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.37■□□□□ 0.53
RHBDL3P58872 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.37■□□□□ 0.53
RHBDL3P58872 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.37■□□□□ 0.53
RHBDL3P58872 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC18.37■□□□□ 0.53
RHBDL3P58872 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 GPR182-203ENST00000622922 591 ntBASIC18.37■□□□□ 0.53
RHBDL3P58872 AL645728.2-202ENST00000641679 227 ntBASIC18.37■□□□□ 0.53
RHBDL3P58872 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 AL139384.1-201ENST00000612143 3047 ntBASIC18.37■□□□□ 0.53
RHBDL3P58872 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.37■□□□□ 0.53
RHBDL3P58872 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RHBDL3P58872 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RHBDL3P58872 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.37■□□□□ 0.53
RHBDL3P58872 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RHBDL3P58872 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.37■□□□□ 0.53
RHBDL3P58872 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.36■□□□□ 0.53
RHBDL3P58872 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.36■□□□□ 0.53
RHBDL3P58872 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RHBDL3P58872 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.36■□□□□ 0.53
RHBDL3P58872 AL513523.2-202ENST00000427283 2040 ntBASIC18.36■□□□□ 0.53
RHBDL3P58872 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC18.36■□□□□ 0.53
RHBDL3P58872 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms