Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
MSH6P52701 AL139094.1-201ENST00000405549 1188 ntBASIC21.43■■□□□ 1.02
MSH6P52701 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC21.43■■□□□ 1.02
MSH6P52701 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 RTN3P1-201ENST00000536295 711 ntBASIC21.43■■□□□ 1.02
MSH6P52701 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 AC106820.3-201ENST00000561653 397 ntBASIC21.43■■□□□ 1.02
MSH6P52701 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC21.43■■□□□ 1.02
MSH6P52701 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC21.43■■□□□ 1.02
MSH6P52701 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
MSH6P52701 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
MSH6P52701 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH6P52701 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
MSH6P52701 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
MSH6P52701 AL136309.1-201ENST00000403917 691 ntBASIC21.42■■□□□ 1.02
MSH6P52701 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 AC242376.1-201ENST00000559033 726 ntBASIC21.42■■□□□ 1.02
MSH6P52701 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
MSH6P52701 RN7SL163P-201ENST00000583100 276 ntBASIC21.42■■□□□ 1.02
MSH6P52701 AC132192.2-201ENST00000596206 1147 ntBASIC21.42■■□□□ 1.02
MSH6P52701 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
MSH6P52701 ATP6V0E2-207ENST00000479613 1666 ntTSL 2 BASIC21.42■■□□□ 1.02
MSH6P52701 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC21.41■■□□□ 1.02
MSH6P52701 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 PFN2-202ENST00000423691 911 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH6P52701 ISCA2P1-201ENST00000425548 448 ntBASIC21.41■■□□□ 1.02
MSH6P52701 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH6P52701 CTBP2P4-201ENST00000513884 920 ntBASIC21.41■■□□□ 1.02
MSH6P52701 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC21.41■■□□□ 1.02
MSH6P52701 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH6P52701 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 AC009084.3-201ENST00000623356 437 ntBASIC21.41■■□□□ 1.02
MSH6P52701 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH6P52701 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH6P52701 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH6P52701 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
MSH6P52701 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC21.41■■□□□ 1.02
MSH6P52701 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
MSH6P52701 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC21.41■■□□□ 1.02
MSH6P52701 AMT-233ENST00000636522 1620 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC21.4■■□□□ 1.02
MSH6P52701 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH6P52701 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH6P52701 DNAJB1P1-201ENST00000429417 1024 ntBASIC21.4■■□□□ 1.02
MSH6P52701 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC21.4■■□□□ 1.02
MSH6P52701 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC21.4■■□□□ 1.02
MSH6P52701 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
MSH6P52701 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms