Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
VCANP13611 KLF2P2-201ENST00000416807 1039 ntBASIC15.92■□□□□ 0.14
VCANP13611 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
VCANP13611 LINC02333-201ENST00000603464 852 ntTSL 3 BASIC15.92■□□□□ 0.14
VCANP13611 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
VCANP13611 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.91■□□□□ 0.14
VCANP13611 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC15.91■□□□□ 0.14
VCANP13611 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 PCDHA12-202ENST00000613593 2588 ntBASIC15.91■□□□□ 0.14
VCANP13611 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
VCANP13611 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
VCANP13611 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC15.91■□□□□ 0.14
VCANP13611 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
VCANP13611 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.91■□□□□ 0.14
VCANP13611 LINC00634-202ENST00000505157 222 ntBASIC15.91■□□□□ 0.14
VCANP13611 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.91■□□□□ 0.14
VCANP13611 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.91■□□□□ 0.14
VCANP13611 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.91■□□□□ 0.14
VCANP13611 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.91■□□□□ 0.14
VCANP13611 AP001002.3-201ENST00000623482 206 ntBASIC15.91■□□□□ 0.14
VCANP13611 AC099398.1-201ENST00000567919 2776 ntBASIC15.91■□□□□ 0.14
VCANP13611 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
VCANP13611 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
VCANP13611 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC15.9■□□□□ 0.14
VCANP13611 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC15.9■□□□□ 0.14
VCANP13611 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 NAMA-206ENST00000605377 509 ntTSL 5 BASIC15.9■□□□□ 0.14
VCANP13611 AC090510.3-201ENST00000615831 821 ntBASIC15.9■□□□□ 0.14
VCANP13611 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 AC009093.2-202ENST00000620513 2079 ntBASIC15.9■□□□□ 0.14
VCANP13611 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 GCSHP3-201ENST00000431120 391 ntBASIC15.9■□□□□ 0.14
VCANP13611 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
VCANP13611 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
VCANP13611 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
VCANP13611 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
VCANP13611 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 AC136604.1-201ENST00000418535 575 ntBASIC15.9■□□□□ 0.14
VCANP13611 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC15.9■□□□□ 0.14
VCANP13611 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.9■□□□□ 0.14
VCANP13611 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC15.9■□□□□ 0.14
VCANP13611 MIR4522-201ENST00000584932 87 ntBASIC15.9■□□□□ 0.14
VCANP13611 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 NAP1L6-202ENST00000641404 1222 ntBASIC15.9■□□□□ 0.14
VCANP13611 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
VCANP13611 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VCANP13611 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC15.89■□□□□ 0.13
VCANP13611 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.89■□□□□ 0.13
VCANP13611 AP001582.1-201ENST00000525856 295 ntBASIC15.89■□□□□ 0.13
VCANP13611 CR383656.3-201ENST00000551315 183 ntBASIC15.89■□□□□ 0.13
VCANP13611 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
VCANP13611 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.89■□□□□ 0.13
VCANP13611 INE2-201ENST00000630399 1874 ntBASIC15.89■□□□□ 0.13
VCANP13611 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.89■□□□□ 0.13
VCANP13611 AC090502.4-201ENST00000551714 1386 ntBASIC15.89■□□□□ 0.13
VCANP13611 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VCANP13611 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.89■□□□□ 0.13
VCANP13611 RPL14-203ENST00000416518 812 ntTSL 3 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms