Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.82□□□□□ -0.04
LDB3O75112 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LDB3O75112 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.82□□□□□ -0.04
LDB3O75112 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LDB3O75112 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 LOX-206ENST00000639739 1626 ntTSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LDB3O75112 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC14.81□□□□□ -0.04
LDB3O75112 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.81□□□□□ -0.04
LDB3O75112 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
LDB3O75112 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.81□□□□□ -0.04
LDB3O75112 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.81□□□□□ -0.04
LDB3O75112 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 SLED1-202ENST00000512051 380 ntBASIC14.81□□□□□ -0.04
LDB3O75112 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.81□□□□□ -0.04
LDB3O75112 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 AC104794.3-201ENST00000566840 1248 ntBASIC14.81□□□□□ -0.04
LDB3O75112 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.81□□□□□ -0.04
LDB3O75112 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.81□□□□□ -0.04
LDB3O75112 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.81□□□□□ -0.04
LDB3O75112 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.81□□□□□ -0.04
LDB3O75112 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 AC105250.1-201ENST00000509378 2057 ntBASIC14.81□□□□□ -0.04
LDB3O75112 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.81□□□□□ -0.04
LDB3O75112 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.81□□□□□ -0.04
LDB3O75112 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.81□□□□□ -0.04
LDB3O75112 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LDB3O75112 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.8□□□□□ -0.04
LDB3O75112 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.8□□□□□ -0.04
LDB3O75112 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.8□□□□□ -0.04
LDB3O75112 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 RPL13P2-201ENST00000440687 659 ntBASIC14.8□□□□□ -0.04
LDB3O75112 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 TSPY16P-201ENST00000449843 468 ntBASIC14.8□□□□□ -0.04
LDB3O75112 AL589987.1-201ENST00000453380 819 ntBASIC14.8□□□□□ -0.04
LDB3O75112 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.8□□□□□ -0.04
LDB3O75112 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.8□□□□□ -0.04
LDB3O75112 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
LDB3O75112 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
LDB3O75112 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.8□□□□□ -0.04
LDB3O75112 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.8□□□□□ -0.04
LDB3O75112 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms