Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 ADAMTSL5-202ENST00000395467 1533 ntTSL 5 BASIC22.64■■□□□ 1.21
CACNA1AO00555 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1AO00555 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.63■■□□□ 1.21
CACNA1AO00555 MIR6722-201ENST00000617286 78 ntBASIC22.63■■□□□ 1.21
CACNA1AO00555 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1AO00555 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC22.63■■□□□ 1.21
CACNA1AO00555 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.63■■□□□ 1.21
CACNA1AO00555 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1AO00555 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
CACNA1AO00555 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.63■■□□□ 1.21
CACNA1AO00555 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC22.62■■□□□ 1.21
CACNA1AO00555 AC027612.3-201ENST00000413684 1047 ntBASIC22.62■■□□□ 1.21
CACNA1AO00555 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC22.62■■□□□ 1.21
CACNA1AO00555 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.62■■□□□ 1.21
CACNA1AO00555 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1AO00555 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
CACNA1AO00555 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.62■■□□□ 1.21
CACNA1AO00555 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
CACNA1AO00555 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
CACNA1AO00555 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1AO00555 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC22.61■■□□□ 1.21
CACNA1AO00555 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
CACNA1AO00555 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1AO00555 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1AO00555 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC22.6■■□□□ 1.21
CACNA1AO00555 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1AO00555 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1AO00555 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1AO00555 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.6■■□□□ 1.21
CACNA1AO00555 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.6■■□□□ 1.21
CACNA1AO00555 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
CACNA1AO00555 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.6■■□□□ 1.21
CACNA1AO00555 TSPY20P-201ENST00000450910 630 ntBASIC22.6■■□□□ 1.21
CACNA1AO00555 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.59■■□□□ 1.21
CACNA1AO00555 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
CACNA1AO00555 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
CACNA1AO00555 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CACNA1AO00555 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC22.58■■□□□ 1.21
CACNA1AO00555 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC22.58■■□□□ 1.21
CACNA1AO00555 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
CACNA1AO00555 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.58■■□□□ 1.21
CACNA1AO00555 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.58■■□□□ 1.2
CACNA1AO00555 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.58■■□□□ 1.2
CACNA1AO00555 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
CACNA1AO00555 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1AO00555 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1AO00555 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
CACNA1AO00555 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1AO00555 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC22.57■■□□□ 1.2
CACNA1AO00555 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1AO00555 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.57■■□□□ 1.2
CACNA1AO00555 AC233992.3-201ENST00000607491 485 ntBASIC22.57■■□□□ 1.2
CACNA1AO00555 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC22.57■■□□□ 1.2
CACNA1AO00555 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
CACNA1AO00555 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1AO00555 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
CACNA1AO00555 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC22.56■■□□□ 1.2
CACNA1AO00555 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CACNA1AO00555 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
CACNA1AO00555 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
CACNA1AO00555 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
CACNA1AO00555 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC22.55■■□□□ 1.2
CACNA1AO00555 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC22.55■■□□□ 1.2
CACNA1AO00555 AC080038.1-201ENST00000611274 1154 ntBASIC22.55■■□□□ 1.2
CACNA1AO00555 MPST-208ENST00000628507 698 ntTSL 5 BASIC22.55■■□□□ 1.2
CACNA1AO00555 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1AO00555 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1AO00555 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.54■■□□□ 1.2
CACNA1AO00555 CD99P1-205ENST00000527459 561 ntBASIC22.54■■□□□ 1.2
CACNA1AO00555 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC22.54■■□□□ 1.2
CACNA1AO00555 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
CACNA1AO00555 CDCA4P2-201ENST00000441182 718 ntBASIC22.54■■□□□ 1.2
CACNA1AO00555 AL499627.2-201ENST00000606283 725 ntBASIC22.54■■□□□ 1.2
CACNA1AO00555 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
CACNA1AO00555 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1AO00555 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.53■■□□□ 1.2
CACNA1AO00555 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC22.53■■□□□ 1.2
CACNA1AO00555 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1AO00555 DET1-205ENST00000558413 583 ntTSL 4 BASIC22.53■■□□□ 1.2
CACNA1AO00555 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.53■■□□□ 1.2
CACNA1AO00555 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CACNA1AO00555 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1AO00555 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.52■■□□□ 1.2
CACNA1AO00555 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1AO00555 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.52■■□□□ 1.2
CACNA1AO00555 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CACNA1AO00555 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1AO00555 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1AO00555 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CACNA1AO00555 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC22.51■■□□□ 1.19
CACNA1AO00555 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.51■■□□□ 1.19
CACNA1AO00555 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.51■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms