Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PCDHGA1Q9Y5H4 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 DRD5P1-201ENST00000456605 1438 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC068418.2-201ENST00000577309 3703 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC104306.2-201ENST00000451877 341 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 PFN2-215ENST00000497148 743 ntTSL 4 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 KRT18P25-201ENST00000508931 1278 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 HNRNPUP1-201ENST00000554987 333 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC015910.1-201ENST00000579400 975 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 PRKN-211ENST00000615065 261 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 AL596257.1-201ENST00000641463 2694 ntBASIC15.1■□□□□ 0.01
PCDHGA1Q9Y5H4 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 AC004898.1-201ENST00000451057 766 ntBASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 IFITM3-202ENST00000526811 543 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 AL008638.5-201ENST00000623814 1298 ntBASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 AHCYP2-201ENST00000430630 1300 ntBASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.09■□□□□ 0.01
PCDHGA1Q9Y5H4 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 PKD1P5-201ENST00000532415 10291 ntBASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PCDHGA1Q9Y5H4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 REXO1L1P-202ENST00000608646 1974 ntBASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0
PCDHGA1Q9Y5H4 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms