Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 COX20P2-201ENST00000452636 358 ntBASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 TERF1P3-201ENST00000505638 1227 ntBASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 AC004790.1-201ENST00000612686 536 ntBASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP4CQ96CF2 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.83■□□□□ 0.61
CHMP4CQ96CF2 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 HFE2-206ENST00000634927 506 ntTSL 4 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.83■□□□□ 0.6
CHMP4CQ96CF2 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 PNKD-204ENST00000436005 978 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 YTHDF3-AS1-201ENST00000603538 718 ntBASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 AC134407.2-201ENST00000625089 1978 ntBASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CHMP4CQ96CF2 MIR600HG-201ENST00000449175 5984 ntBASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CHMP4CQ96CF2 CYP4F24P-201ENST00000586049 1580 ntBASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms