Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC021723.1-201ENST00000486306 515 ntBASIC21.04■□□□□ 0.96
NPHP3Q7Z494 LY6E-208ENST00000520531 490 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AC106820.3-201ENST00000561653 397 ntBASIC21.04■□□□□ 0.96
NPHP3Q7Z494 CENPX-208ENST00000584347 799 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 BNIP3P13-201ENST00000599968 566 ntBASIC21.04■□□□□ 0.96
NPHP3Q7Z494 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
NPHP3Q7Z494 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 AL136309.1-201ENST00000403917 691 ntBASIC21.03■□□□□ 0.96
NPHP3Q7Z494 EIF3FP3-201ENST00000434851 1086 ntBASIC21.03■□□□□ 0.96
NPHP3Q7Z494 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NPHP3Q7Z494 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.02■□□□□ 0.96
NPHP3Q7Z494 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NPHP3Q7Z494 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 LSM5-207ENST00000410044 687 ntTSL 3 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 SLC16A6P1-201ENST00000413214 1059 ntBASIC21.02■□□□□ 0.95
NPHP3Q7Z494 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 EID1-202ENST00000560490 584 ntTSL 3 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
NPHP3Q7Z494 AL805961.1-203ENST00000641078 1258 ntBASIC21.02■□□□□ 0.95
NPHP3Q7Z494 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 FLII-221ENST00000578558 2377 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 MFF-204ENST00000353339 2186 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 NPPA-201ENST00000376476 728 ntTSL 3 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 CSH2-206ENST00000560142 749 ntTSL 5 BASIC21.01■□□□□ 0.95
NPHP3Q7Z494 MIR4313-201ENST00000580760 101 ntBASIC21.01■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms