Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MIR4683-201ENST00000579659 81 ntBASIC12.84□□□□□ -0.35
VPS13CQ709C8 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MST1L-201ENST00000442552 2185 ntBASIC12.84□□□□□ -0.35
VPS13CQ709C8 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 FRMD6-AS1-201ENST00000617151 2229 ntBASIC12.84□□□□□ -0.35
VPS13CQ709C8 AC013726.1-201ENST00000563747 2285 ntBASIC12.84□□□□□ -0.35
VPS13CQ709C8 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 RGS5-214ENST00000429865 754 ntTSL 3 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 BX539320.1-201ENST00000623759 877 ntBASIC12.84□□□□□ -0.35
VPS13CQ709C8 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 NKILA-202ENST00000614771 2598 ntBASIC12.84□□□□□ -0.35
VPS13CQ709C8 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
VPS13CQ709C8 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.84□□□□□ -0.35
VPS13CQ709C8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
VPS13CQ709C8 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 AC125604.1-201ENST00000496255 707 ntBASIC12.83□□□□□ -0.35
VPS13CQ709C8 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
VPS13CQ709C8 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
VPS13CQ709C8 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
VPS13CQ709C8 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
VPS13CQ709C8 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 AC234782.1-201ENST00000451950 919 ntBASIC12.83□□□□□ -0.36
VPS13CQ709C8 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC12.83□□□□□ -0.36
VPS13CQ709C8 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
VPS13CQ709C8 PRAL-201ENST00000624952 3286 ntBASIC12.83□□□□□ -0.36
VPS13CQ709C8 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
VPS13CQ709C8 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
VPS13CQ709C8 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
VPS13CQ709C8 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
VPS13CQ709C8 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms