Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.01■□□□□ 0.31
KRT39Q6A163 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
KRT39Q6A163 RPL13P2-201ENST00000440687 659 ntBASIC17.01■□□□□ 0.31
KRT39Q6A163 AC009477.1-201ENST00000452936 217 ntBASIC17.01■□□□□ 0.31
KRT39Q6A163 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.01■□□□□ 0.31
KRT39Q6A163 AC044860.1-202ENST00000559481 777 ntBASIC17.01■□□□□ 0.31
KRT39Q6A163 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC17.01■□□□□ 0.31
KRT39Q6A163 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.01■□□□□ 0.31
KRT39Q6A163 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 AL390955.2-201ENST00000603032 514 ntBASIC17.01■□□□□ 0.31
KRT39Q6A163 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.01■□□□□ 0.31
KRT39Q6A163 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
KRT39Q6A163 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 AC126177.1-201ENST00000547829 2218 ntBASIC17.01■□□□□ 0.31
KRT39Q6A163 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.01■□□□□ 0.31
KRT39Q6A163 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
KRT39Q6A163 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.01■□□□□ 0.31
KRT39Q6A163 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17■□□□□ 0.31
KRT39Q6A163 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
KRT39Q6A163 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
KRT39Q6A163 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17■□□□□ 0.31
KRT39Q6A163 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17■□□□□ 0.31
KRT39Q6A163 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17■□□□□ 0.31
KRT39Q6A163 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17■□□□□ 0.31
KRT39Q6A163 KRT18P64-201ENST00000434946 1219 ntBASIC17■□□□□ 0.31
KRT39Q6A163 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
KRT39Q6A163 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17■□□□□ 0.31
KRT39Q6A163 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17■□□□□ 0.31
KRT39Q6A163 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC17■□□□□ 0.31
KRT39Q6A163 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17■□□□□ 0.31
KRT39Q6A163 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17■□□□□ 0.31
KRT39Q6A163 LINC01115-203ENST00000606068 577 ntBASIC17■□□□□ 0.31
KRT39Q6A163 TEX48-202ENST00000612244 662 ntTSL 3 BASIC17■□□□□ 0.31
KRT39Q6A163 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC17■□□□□ 0.31
KRT39Q6A163 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17■□□□□ 0.31
KRT39Q6A163 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17■□□□□ 0.31
KRT39Q6A163 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
KRT39Q6A163 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
KRT39Q6A163 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 AC013268.4-201ENST00000637413 2228 ntBASIC17■□□□□ 0.31
KRT39Q6A163 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17■□□□□ 0.31
KRT39Q6A163 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC17■□□□□ 0.31
KRT39Q6A163 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
KRT39Q6A163 HYMAI-201ENST00000635591 3347 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.99■□□□□ 0.31
KRT39Q6A163 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
KRT39Q6A163 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.99■□□□□ 0.31
KRT39Q6A163 AC104640.1-201ENST00000562617 2109 ntBASIC16.99■□□□□ 0.31
KRT39Q6A163 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms