Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
LMO4P61968 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
LMO4P61968 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 FAM86MP-201ENST00000340703 885 ntBASIC12.83□□□□□ -0.36
LMO4P61968 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
LMO4P61968 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 CNN2P8-201ENST00000421872 913 ntBASIC12.83□□□□□ -0.36
LMO4P61968 FAM21FP-201ENST00000426241 1131 ntBASIC12.83□□□□□ -0.36
LMO4P61968 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC12.83□□□□□ -0.36
LMO4P61968 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 KRT18P25-201ENST00000508931 1278 ntBASIC12.83□□□□□ -0.36
LMO4P61968 RPL8-205ENST00000527914 551 ntTSL 3 BASIC12.83□□□□□ -0.36
LMO4P61968 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC12.83□□□□□ -0.36
LMO4P61968 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC12.83□□□□□ -0.36
LMO4P61968 AC025279.2-201ENST00000569730 653 ntBASIC12.83□□□□□ -0.36
LMO4P61968 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC12.83□□□□□ -0.36
LMO4P61968 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC12.83□□□□□ -0.36
LMO4P61968 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC12.83□□□□□ -0.36
LMO4P61968 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
LMO4P61968 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.83□□□□□ -0.36
LMO4P61968 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC12.83□□□□□ -0.36
LMO4P61968 ACE-203ENST00000413513 2237 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 SUPT20HL2-201ENST00000486479 2409 ntBASIC12.82□□□□□ -0.36
LMO4P61968 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
LMO4P61968 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
LMO4P61968 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
LMO4P61968 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC12.82□□□□□ -0.36
LMO4P61968 AC026954.1-201ENST00000429771 1293 ntBASIC12.82□□□□□ -0.36
LMO4P61968 ACTBP11-201ENST00000436287 1126 ntBASIC12.82□□□□□ -0.36
LMO4P61968 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC12.82□□□□□ -0.36
LMO4P61968 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC12.82□□□□□ -0.36
LMO4P61968 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC12.82□□□□□ -0.36
LMO4P61968 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 LARP4-220ENST00000615080 856 ntTSL 5 BASIC12.82□□□□□ -0.36
LMO4P61968 AC145423.3-201ENST00000615987 467 ntBASIC12.82□□□□□ -0.36
LMO4P61968 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
LMO4P61968 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC12.82□□□□□ -0.36
LMO4P61968 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 TUBB1P2-201ENST00000422712 1306 ntBASIC12.82□□□□□ -0.36
LMO4P61968 TUBB1P1-201ENST00000503144 1300 ntBASIC12.82□□□□□ -0.36
LMO4P61968 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC12.82□□□□□ -0.36
LMO4P61968 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
LMO4P61968 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
LMO4P61968 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms