Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.83□□□□□ -0.04
COL5A1P20908 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 TPM3P8-201ENST00000330554 643 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 GGCT-203ENST00000409144 836 ntTSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC14.82□□□□□ -0.04
COL5A1P20908 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC14.82□□□□□ -0.04
COL5A1P20908 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC14.82□□□□□ -0.04
COL5A1P20908 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC14.82□□□□□ -0.04
COL5A1P20908 AC245884.6-201ENST00000515672 1067 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 GGCT-201ENST00000005374 1032 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC14.82□□□□□ -0.04
COL5A1P20908 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.82□□□□□ -0.04
COL5A1P20908 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 AC025181.2-201ENST00000606994 802 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 AL136309.1-201ENST00000403917 691 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC14.82□□□□□ -0.04
COL5A1P20908 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 ATP6V0CP2-201ENST00000469409 207 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 COX5BP1-201ENST00000507622 393 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.82□□□□□ -0.04
COL5A1P20908 RN7SL574P-201ENST00000581512 297 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 AC007663.3-201ENST00000609632 465 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 AC128714.1-201ENST00000637035 887 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 AL158070.2-201ENST00000623713 1621 ntBASIC14.82□□□□□ -0.04
COL5A1P20908 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.82□□□□□ -0.04
COL5A1P20908 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
COL5A1P20908 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
COL5A1P20908 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.81□□□□□ -0.04
COL5A1P20908 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC14.81□□□□□ -0.04
COL5A1P20908 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 AL645939.5-201ENST00000606834 243 ntBASIC14.81□□□□□ -0.04
COL5A1P20908 U62317.3-201ENST00000608319 855 ntBASIC14.81□□□□□ -0.04
COL5A1P20908 AC091544.8-201ENST00000619490 361 ntBASIC14.81□□□□□ -0.04
COL5A1P20908 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC14.81□□□□□ -0.04
COL5A1P20908 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
COL5A1P20908 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
COL5A1P20908 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
COL5A1P20908 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms