Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 AL590235.1-201ENST00000564650 861 ntBASIC15.95■□□□□ 0.14
COL6A3P12111 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC022188.1-201ENST00000620960 1664 ntBASIC15.95■□□□□ 0.14
COL6A3P12111 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 CASP2-203ENST00000392925 616 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC245100.5-201ENST00000452108 331 ntBASIC15.95■□□□□ 0.14
COL6A3P12111 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 AC083801.1-201ENST00000491689 358 ntBASIC15.95■□□□□ 0.14
COL6A3P12111 AC092612.1-201ENST00000514501 998 ntBASIC15.95■□□□□ 0.14
COL6A3P12111 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
COL6A3P12111 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
COL6A3P12111 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
COL6A3P12111 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 FAM197Y6-201ENST00000420524 766 ntBASIC15.94■□□□□ 0.14
COL6A3P12111 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 TREHP1-201ENST00000531328 465 ntBASIC15.94■□□□□ 0.14
COL6A3P12111 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC15.94■□□□□ 0.14
COL6A3P12111 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC15.94■□□□□ 0.14
COL6A3P12111 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A3P12111 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 AC114812.1-204ENST00000449669 728 ntBASIC15.94■□□□□ 0.14
COL6A3P12111 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC15.94■□□□□ 0.14
COL6A3P12111 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC15.94■□□□□ 0.14
COL6A3P12111 AC063952.3-201ENST00000467756 308 ntBASIC15.94■□□□□ 0.14
COL6A3P12111 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.94■□□□□ 0.14
COL6A3P12111 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
COL6A3P12111 ABALON-201ENST00000629058 1903 ntBASIC15.94■□□□□ 0.14
COL6A3P12111 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
COL6A3P12111 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 AL109837.1-201ENST00000603272 613 ntBASIC15.93■□□□□ 0.14
COL6A3P12111 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 LINC01165-201ENST00000445190 1623 ntBASIC15.93■□□□□ 0.14
COL6A3P12111 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 OLA1P2-201ENST00000395519 1264 ntBASIC15.93■□□□□ 0.14
COL6A3P12111 NEU3-207ENST00000534628 746 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 AL513165.2-203ENST00000537239 717 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL6A3P12111 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 E2F3P2-201ENST00000447755 1422 ntBASIC15.93■□□□□ 0.14
COL6A3P12111 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
COL6A3P12111 FAU-201ENST00000279259 461 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 NHP2P1-201ENST00000335274 462 ntBASIC15.93■□□□□ 0.14
COL6A3P12111 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC15.93■□□□□ 0.14
COL6A3P12111 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
COL6A3P12111 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC15.93■□□□□ 0.14
COL6A3P12111 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC15.93■□□□□ 0.14
COL6A3P12111 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
COL6A3P12111 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
COL6A3P12111 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms