Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 AC140658.5-201ENST00000438532 169 ntBASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 KRT18P35-201ENST00000510488 1269 ntBASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 BMF-207ENST00000559701 630 ntTSL 3 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 AC023024.2-201ENST00000623561 1993 ntBASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 OR2I1P-210ENST00000642037 4691 ntBASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
CCDC28BQ9BUN5 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 RHOQP3-201ENST00000437982 621 ntBASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TOLLIP-AS1-201ENST00000530897 939 ntBASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 AC096734.2-201ENST00000562054 433 ntBASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TCAP-202ENST00000578283 583 ntTSL 5 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 AC024267.1-201ENST00000582320 895 ntBASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 ZBED1P1-201ENST00000502364 1930 ntBASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
CCDC28BQ9BUN5 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.06
CCDC28BQ9BUN5 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 AC004987.2-201ENST00000395959 1148 ntBASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 FAM197Y8-203ENST00000450145 560 ntBASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 TPM1-226ENST00000560959 925 ntTSL 2 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 ARL16-209ENST00000573715 763 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 ARL16-211ENST00000576135 694 ntTSL 3 BASIC15.39■□□□□ 0.05
CCDC28BQ9BUN5 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms