Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 EID1-202ENST00000560490 584 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 SAMD11P1-201ENST00000571429 661 ntBASIC15.26■□□□□ 0.03
VPS13AQ96RL7 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 AC011742.3-201ENST00000439053 820 ntBASIC15.26■□□□□ 0.03
VPS13AQ96RL7 NAGK-204ENST00000443872 878 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 AC104073.2-201ENST00000453737 312 ntBASIC15.26■□□□□ 0.03
VPS13AQ96RL7 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ALG1L13P-202ENST00000519320 584 ntBASIC15.26■□□□□ 0.03
VPS13AQ96RL7 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ETV2-207ENST00000619399 994 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 MIR4683-201ENST00000579659 81 ntBASIC15.26■□□□□ 0.03
VPS13AQ96RL7 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
VPS13AQ96RL7 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 AGPAT5P1-201ENST00000455855 1019 ntBASIC15.25■□□□□ 0.03
VPS13AQ96RL7 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 AC006158.1-201ENST00000610661 249 ntBASIC15.25■□□□□ 0.03
VPS13AQ96RL7 ENPP7P14-201ENST00000621765 1040 ntBASIC15.25■□□□□ 0.03
VPS13AQ96RL7 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.25■□□□□ 0.03
VPS13AQ96RL7 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 FLJ38576-201ENST00000623820 2459 ntBASIC15.24■□□□□ 0.03
VPS13AQ96RL7 AC074138.1-201ENST00000611182 1303 ntBASIC15.24■□□□□ 0.03
VPS13AQ96RL7 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 FAM8A4P-201ENST00000435433 1213 ntBASIC15.24■□□□□ 0.03
VPS13AQ96RL7 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC15.24■□□□□ 0.03
VPS13AQ96RL7 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC15.24■□□□□ 0.03
VPS13AQ96RL7 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms