Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS8Q8N3P4 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
VPS8Q8N3P4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 AC148477.4-201ENST00000613430 1793 ntBASIC24.29■■□□□ 1.48
VPS8Q8N3P4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 GK-202ENST00000378941 458 ntTSL 3 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 HLA-K-203ENST00000430151 1046 ntBASIC24.29■■□□□ 1.48
VPS8Q8N3P4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 TMBIM7P-203ENST00000641617 1718 ntBASIC24.29■■□□□ 1.48
VPS8Q8N3P4 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 AL158070.2-201ENST00000623713 1621 ntBASIC24.29■■□□□ 1.48
VPS8Q8N3P4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 KRT8P14-201ENST00000414254 1442 ntBASIC24.29■■□□□ 1.48
VPS8Q8N3P4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC24.29■■□□□ 1.48
VPS8Q8N3P4 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 KLF2P2-201ENST00000416807 1039 ntBASIC24.28■■□□□ 1.48
VPS8Q8N3P4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 AP005019.2-201ENST00000615104 511 ntBASIC24.28■■□□□ 1.48
VPS8Q8N3P4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 AL138709.1-201ENST00000614840 1693 ntBASIC24.28■■□□□ 1.48
VPS8Q8N3P4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
VPS8Q8N3P4 PDIA3P1-201ENST00000471856 1510 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 ATP5G2P4-201ENST00000442175 420 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 FTH1P14-201ENST00000482930 551 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 RAB43P1-201ENST00000561790 589 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AC134312.5-201ENST00000568031 1313 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AL355864.2-201ENST00000447420 863 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AC004066.1-201ENST00000502488 802 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC24.27■■□□□ 1.48
VPS8Q8N3P4 AL022328.1-201ENST00000610050 478 ntBASIC24.27■■□□□ 1.48
VPS8Q8N3P4 SSR4P1-203ENST00000599569 2260 ntBASIC24.27■■□□□ 1.47
VPS8Q8N3P4 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS8Q8N3P4 AC136621.1-201ENST00000624017 2304 ntBASIC24.26■■□□□ 1.47
VPS8Q8N3P4 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS8Q8N3P4 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC24.26■■□□□ 1.47
VPS8Q8N3P4 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
VPS8Q8N3P4 C18orf15-201ENST00000623680 2534 ntBASIC24.26■■□□□ 1.47
VPS8Q8N3P4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC24.26■■□□□ 1.47
VPS8Q8N3P4 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC24.26■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms