Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 MAX-210ENST00000555419 765 ntTSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.93□□□□□ -0.02
RFX3P48380 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.93□□□□□ -0.02
RFX3P48380 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.93□□□□□ -0.02
RFX3P48380 MIR6080-201ENST00000617359 66 ntBASIC14.93□□□□□ -0.02
RFX3P48380 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 AC112504.1-201ENST00000623415 1841 ntBASIC14.93□□□□□ -0.02
RFX3P48380 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 GOLGA6L17P-202ENST00000614358 1398 ntBASIC14.93□□□□□ -0.02
RFX3P48380 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.93□□□□□ -0.02
RFX3P48380 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
RFX3P48380 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.92□□□□□ -0.02
RFX3P48380 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.92□□□□□ -0.02
RFX3P48380 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.92□□□□□ -0.02
RFX3P48380 AP006288.1-201ENST00000446065 395 ntBASIC14.92□□□□□ -0.02
RFX3P48380 AC245100.5-201ENST00000452108 331 ntBASIC14.92□□□□□ -0.02
RFX3P48380 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.92□□□□□ -0.02
RFX3P48380 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC14.92□□□□□ -0.02
RFX3P48380 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
RFX3P48380 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.92□□□□□ -0.02
RFX3P48380 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
RFX3P48380 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
RFX3P48380 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
RFX3P48380 HNRNPFP1-201ENST00000391730 1133 ntBASIC14.91□□□□□ -0.02
RFX3P48380 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 AL353705.2-201ENST00000428243 662 ntBASIC14.91□□□□□ -0.02
RFX3P48380 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
RFX3P48380 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.91□□□□□ -0.02
RFX3P48380 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
RFX3P48380 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.91□□□□□ -0.02
RFX3P48380 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.91□□□□□ -0.02
RFX3P48380 AC027612.4-201ENST00000605371 583 ntBASIC14.91□□□□□ -0.02
RFX3P48380 AC009093.7-201ENST00000623853 1223 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms