Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.53■□□□□ 0.08
CXCL12P48061 HLA-DQB2-229ENST00000411527 1059 ntBASIC15.53■□□□□ 0.08
CXCL12P48061 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 FAM8A4P-201ENST00000435433 1213 ntBASIC15.53■□□□□ 0.08
CXCL12P48061 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 RPS2P36-201ENST00000456516 831 ntBASIC15.53■□□□□ 0.08
CXCL12P48061 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.53■□□□□ 0.08
CXCL12P48061 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC15.53■□□□□ 0.08
CXCL12P48061 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 AP001505.2-201ENST00000616815 443 ntBASIC15.53■□□□□ 0.08
CXCL12P48061 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC15.53■□□□□ 0.08
CXCL12P48061 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.53■□□□□ 0.08
CXCL12P48061 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.53■□□□□ 0.08
CXCL12P48061 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC15.53■□□□□ 0.08
CXCL12P48061 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CXCL12P48061 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 ME2P1-201ENST00000426028 1970 ntBASIC15.53■□□□□ 0.08
CXCL12P48061 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.53■□□□□ 0.08
CXCL12P48061 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL12P48061 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.52■□□□□ 0.08
CXCL12P48061 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CXCL12P48061 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL12P48061 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 RPS15-201ENST00000233609 534 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL12P48061 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CXCL12P48061 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CXCL12P48061 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
CXCL12P48061 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 PTPA-217ENST00000434095 870 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL12P48061 NKAIN1P1-201ENST00000435754 582 ntBASIC15.52■□□□□ 0.08
CXCL12P48061 AC253536.4-201ENST00000440539 267 ntBASIC15.52■□□□□ 0.08
CXCL12P48061 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.52■□□□□ 0.08
CXCL12P48061 Z97180.1-201ENST00000445173 988 ntBASIC15.52■□□□□ 0.08
CXCL12P48061 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.52■□□□□ 0.08
CXCL12P48061 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.52■□□□□ 0.08
CXCL12P48061 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 SERPINA13P-202ENST00000478994 924 ntBASIC15.52■□□□□ 0.08
CXCL12P48061 AC044849.1-201ENST00000519737 1188 ntBASIC15.52■□□□□ 0.08
CXCL12P48061 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.52■□□□□ 0.08
CXCL12P48061 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CXCL12P48061 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC15.52■□□□□ 0.08
CXCL12P48061 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CXCL12P48061 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 68.5 ms