Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 AC112504.1-201ENST00000623415 1841 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 MIR769-201ENST00000390225 118 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.85□□□□□ -0.03
COL5A1P20908 KRTAP19-9P-201ENST00000421795 191 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC14.85□□□□□ -0.03
COL5A1P20908 RPS2P36-201ENST00000456516 831 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 RN7SL769P-201ENST00000469386 295 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 AL391280.1-201ENST00000506969 1062 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC14.85□□□□□ -0.03
COL5A1P20908 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
COL5A1P20908 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 AC244157.2-201ENST00000616239 1006 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
COL5A1P20908 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC14.84□□□□□ -0.03
COL5A1P20908 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL5A1P20908 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
COL5A1P20908 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.84□□□□□ -0.03
COL5A1P20908 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL5A1P20908 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 NKAIN1P1-201ENST00000435754 582 ntBASIC14.84□□□□□ -0.03
COL5A1P20908 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC14.84□□□□□ -0.03
COL5A1P20908 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC14.84□□□□□ -0.03
COL5A1P20908 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.84□□□□□ -0.03
COL5A1P20908 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
COL5A1P20908 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
COL5A1P20908 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
COL5A1P20908 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.83□□□□□ -0.03
COL5A1P20908 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL5A1P20908 AL596087.1-201ENST00000400979 1969 ntBASIC14.83□□□□□ -0.03
COL5A1P20908 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL5A1P20908 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC14.83□□□□□ -0.03
COL5A1P20908 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
COL5A1P20908 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
COL5A1P20908 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 SMS-201ENST00000379404 1174 ntTSL 3 BASIC14.83□□□□□ -0.04
COL5A1P20908 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
COL5A1P20908 AC007274.2-201ENST00000421675 662 ntBASIC14.83□□□□□ -0.04
COL5A1P20908 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC14.83□□□□□ -0.04
COL5A1P20908 IMP3P2-201ENST00000489760 475 ntBASIC14.83□□□□□ -0.04
COL5A1P20908 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC14.83□□□□□ -0.04
COL5A1P20908 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.83□□□□□ -0.04
COL5A1P20908 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC14.83□□□□□ -0.04
COL5A1P20908 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.83□□□□□ -0.04
COL5A1P20908 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC14.83□□□□□ -0.04
COL5A1P20908 DOC2GP-204ENST00000639052 2548 ntBASIC14.83□□□□□ -0.04
COL5A1P20908 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.83□□□□□ -0.04
COL5A1P20908 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
COL5A1P20908 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC14.83□□□□□ -0.04
COL5A1P20908 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 113.3 ms