Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CTBP2P5-201ENST00000454986 1264 ntBASIC20.48■□□□□ 0.87
COL3A1P02461 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.48■□□□□ 0.87
COL3A1P02461 COX11-210ENST00000639671 696 ntBASIC20.48■□□□□ 0.87
COL3A1P02461 STRN-202ENST00000379213 2254 ntTSL 5 BASIC20.48■□□□□ 0.87
COL3A1P02461 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC20.48■□□□□ 0.87
COL3A1P02461 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC20.48■□□□□ 0.87
COL3A1P02461 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC20.47■□□□□ 0.87
COL3A1P02461 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC20.47■□□□□ 0.87
COL3A1P02461 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
COL3A1P02461 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC20.47■□□□□ 0.87
COL3A1P02461 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC20.47■□□□□ 0.87
COL3A1P02461 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC20.47■□□□□ 0.87
COL3A1P02461 AL645937.2-201ENST00000396808 931 ntBASIC20.47■□□□□ 0.87
COL3A1P02461 LSM5-207ENST00000410044 687 ntTSL 3 BASIC20.47■□□□□ 0.87
COL3A1P02461 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.47■□□□□ 0.87
COL3A1P02461 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC20.47■□□□□ 0.87
COL3A1P02461 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
COL3A1P02461 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC20.47■□□□□ 0.87
COL3A1P02461 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.47■□□□□ 0.87
COL3A1P02461 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC20.47■□□□□ 0.87
COL3A1P02461 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.47■□□□□ 0.87
COL3A1P02461 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC20.47■□□□□ 0.87
COL3A1P02461 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 PRAL-201ENST00000624952 3286 ntBASIC20.47■□□□□ 0.87
COL3A1P02461 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL3A1P02461 AP003680.1-201ENST00000598970 3660 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC20.46■□□□□ 0.87
COL3A1P02461 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
COL3A1P02461 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC20.46■□□□□ 0.87
COL3A1P02461 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
COL3A1P02461 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
COL3A1P02461 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 KRT43P-201ENST00000434019 910 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.46■□□□□ 0.87
COL3A1P02461 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 BNIP3P42-201ENST00000454982 569 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 DUX4L47-201ENST00000566374 394 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 BNIP3P29-201ENST00000598302 571 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.46■□□□□ 0.87
COL3A1P02461 AC145423.3-201ENST00000615987 467 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 AC011447.5-201ENST00000616168 564 ntBASIC20.46■□□□□ 0.87
COL3A1P02461 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.46■□□□□ 0.87
COL3A1P02461 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC20.46■□□□□ 0.87
COL3A1P02461 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC20.46■□□□□ 0.87
COL3A1P02461 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL3A1P02461 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
COL3A1P02461 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC20.45■□□□□ 0.86
COL3A1P02461 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
COL3A1P02461 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
COL3A1P02461 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC20.45■□□□□ 0.86
COL3A1P02461 AC104989.1-201ENST00000519711 778 ntBASIC20.45■□□□□ 0.86
COL3A1P02461 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms