Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP4O75161 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP4O75161 AL136301.1-201ENST00000615830 422 ntBASIC21.67■■□□□ 1.06
NPHP4O75161 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC21.67■■□□□ 1.06
NPHP4O75161 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
NPHP4O75161 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 AC018470.1-201ENST00000624790 3129 ntBASIC21.67■■□□□ 1.06
NPHP4O75161 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
NPHP4O75161 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC21.67■■□□□ 1.06
NPHP4O75161 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC21.66■■□□□ 1.06
NPHP4O75161 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP4O75161 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP4O75161 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP4O75161 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC21.66■■□□□ 1.06
NPHP4O75161 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC21.66■■□□□ 1.06
NPHP4O75161 RPL17P45-201ENST00000586289 509 ntBASIC21.66■■□□□ 1.06
NPHP4O75161 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 AC020916.1-201ENST00000587762 1774 ntBASIC21.66■■□□□ 1.06
NPHP4O75161 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
NPHP4O75161 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC21.66■■□□□ 1.06
NPHP4O75161 CAP2P1-201ENST00000557743 1390 ntBASIC21.65■■□□□ 1.06
NPHP4O75161 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
NPHP4O75161 HPGD-203ENST00000422112 805 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP4O75161 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP4O75161 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP4O75161 AL139008.1-201ENST00000437894 228 ntBASIC21.65■■□□□ 1.06
NPHP4O75161 NAGK-204ENST00000443872 878 ntTSL 3 BASIC21.65■■□□□ 1.06
NPHP4O75161 PFN2-205ENST00000461868 613 ntTSL 2 BASIC21.65■■□□□ 1.06
NPHP4O75161 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC21.65■■□□□ 1.06
NPHP4O75161 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
NPHP4O75161 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC21.65■■□□□ 1.06
NPHP4O75161 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC21.65■■□□□ 1.06
NPHP4O75161 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 AP000593.2-201ENST00000542775 1433 ntBASIC21.65■■□□□ 1.06
NPHP4O75161 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC21.65■■□□□ 1.06
NPHP4O75161 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC21.65■■□□□ 1.06
NPHP4O75161 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
NPHP4O75161 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
NPHP4O75161 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP4O75161 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC21.64■■□□□ 1.06
NPHP4O75161 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP4O75161 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP4O75161 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP4O75161 AP000356.3-201ENST00000382243 753 ntBASIC21.64■■□□□ 1.06
NPHP4O75161 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC21.64■■□□□ 1.06
NPHP4O75161 PAM16-211ENST00000575848 518 ntTSL 3 BASIC21.64■■□□□ 1.06
NPHP4O75161 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
NPHP4O75161 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC21.64■■□□□ 1.06
NPHP4O75161 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP4O75161 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
NPHP4O75161 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC21.64■■□□□ 1.05
NPHP4O75161 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
NPHP4O75161 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 AC011477.6-201ENST00000604980 1927 ntBASIC21.64■■□□□ 1.05
NPHP4O75161 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
NPHP4O75161 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 AL022344.2-201ENST00000568976 968 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 MIR3677-201ENST00000578964 60 ntBASIC21.63■■□□□ 1.05
NPHP4O75161 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
NPHP4O75161 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC21.63■■□□□ 1.05
NPHP4O75161 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC21.63■■□□□ 1.05
NPHP4O75161 BANP-227ENST00000626016 2144 ntTSL 2 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms