Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 AC079781.5-202ENST00000641784 3743 ntBASIC12.78□□□□□ -0.36
HMGB3O15347 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 TIAM1-201ENST00000286827 7200 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 PMS2P1-201ENST00000431037 1228 ntBASIC12.78□□□□□ -0.36
HMGB3O15347 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 KRT8P26-201ENST00000534154 1276 ntBASIC12.78□□□□□ -0.36
HMGB3O15347 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC12.78□□□□□ -0.36
HMGB3O15347 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 AC005363.2-201ENST00000618631 242 ntBASIC12.78□□□□□ -0.36
HMGB3O15347 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 LINC00528-201ENST00000600723 2160 ntBASIC12.78□□□□□ -0.36
HMGB3O15347 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC12.78□□□□□ -0.36
HMGB3O15347 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 TNRC6C-211ENST00000636222 7093 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.78□□□□□ -0.36
HMGB3O15347 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 CACNA1F-203ENST00000376265 6070 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
HMGB3O15347 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC12.78□□□□□ -0.36
HMGB3O15347 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.77□□□□□ -0.36
HMGB3O15347 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC12.77□□□□□ -0.36
HMGB3O15347 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.77□□□□□ -0.36
HMGB3O15347 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
HMGB3O15347 GPRC5A-201ENST00000014914 7362 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 SNX29-205ENST00000566228 8171 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
HMGB3O15347 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 ZEB1-AS1-208ENST00000607166 2503 ntBASIC12.77□□□□□ -0.37
HMGB3O15347 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC12.77□□□□□ -0.37
HMGB3O15347 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC12.77□□□□□ -0.37
HMGB3O15347 KRT18P57-201ENST00000443599 1254 ntBASIC12.77□□□□□ -0.37
HMGB3O15347 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC12.77□□□□□ -0.37
HMGB3O15347 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 PGM5P2-202ENST00000637225 1043 ntBASIC12.77□□□□□ -0.37
HMGB3O15347 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.77□□□□□ -0.37
HMGB3O15347 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 KCNJ5-202ENST00000529694 5940 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
HMGB3O15347 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 SIGLEC16-201ENST00000599858 1437 ntBASIC12.77□□□□□ -0.37
HMGB3O15347 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
HMGB3O15347 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC12.77□□□□□ -0.37
HMGB3O15347 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC12.77□□□□□ -0.37
HMGB3O15347 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 MYRF-201ENST00000265460 5745 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
HMGB3O15347 SLC22A20-204ENST00000530038 1673 ntBASIC12.77□□□□□ -0.37
HMGB3O15347 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
HMGB3O15347 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 AC015656.1-201ENST00000624209 3578 ntBASIC12.76□□□□□ -0.37
HMGB3O15347 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
HMGB3O15347 USP19-207ENST00000434032 4677 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
HMGB3O15347 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms