Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
IFT140Q96RY7 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
IFT140Q96RY7 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
IFT140Q96RY7 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC25.41■■□□□ 1.66
IFT140Q96RY7 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC25.41■■□□□ 1.66
IFT140Q96RY7 CDC23-208ENST00000505120 455 ntTSL 3 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
IFT140Q96RY7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
IFT140Q96RY7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
IFT140Q96RY7 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
IFT140Q96RY7 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC25.41■■□□□ 1.66
IFT140Q96RY7 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AL512430.1-201ENST00000392575 860 ntBASIC25.4■■□□□ 1.66
IFT140Q96RY7 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AL590093.1-201ENST00000416119 623 ntTSL 5 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AC105137.3-201ENST00000617588 984 ntBASIC25.4■■□□□ 1.66
IFT140Q96RY7 KRT8P21-201ENST00000430398 1491 ntBASIC25.4■■□□□ 1.66
IFT140Q96RY7 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AK6-201ENST00000380818 1183 ntTSL 2 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 RPL8P2-201ENST00000430538 502 ntBASIC25.4■■□□□ 1.66
IFT140Q96RY7 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 NSD1-211ENST00000511258 809 ntTSL 3 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 RN7SL596P-201ENST00000582123 288 ntBASIC25.4■■□□□ 1.66
IFT140Q96RY7 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AL132780.4-201ENST00000624870 1135 ntBASIC25.4■■□□□ 1.66
IFT140Q96RY7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
IFT140Q96RY7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
IFT140Q96RY7 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
IFT140Q96RY7 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
IFT140Q96RY7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
IFT140Q96RY7 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
IFT140Q96RY7 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC25.39■■□□□ 1.66
IFT140Q96RY7 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC25.39■■□□□ 1.66
IFT140Q96RY7 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 AC018463.1-201ENST00000456674 917 ntBASIC25.39■■□□□ 1.65
IFT140Q96RY7 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 AL157813.1-201ENST00000612996 587 ntBASIC25.39■■□□□ 1.65
IFT140Q96RY7 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.65
IFT140Q96RY7 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
IFT140Q96RY7 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 AC005052.1-201ENST00000625181 2492 ntBASIC25.38■■□□□ 1.65
IFT140Q96RY7 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 GLUD1P2-203ENST00000631118 486 ntTSL 3 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 Z98259.2-201ENST00000641583 609 ntBASIC25.38■■□□□ 1.65
IFT140Q96RY7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
IFT140Q96RY7 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
IFT140Q96RY7 MBLAC2-202ENST00000514906 1936 ntBASIC25.37■■□□□ 1.65
IFT140Q96RY7 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms