Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TTC28Q96AY4 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC15.64■□□□□ 0.09
TTC28Q96AY4 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AC004837.1-201ENST00000446267 564 ntBASIC15.63■□□□□ 0.09
TTC28Q96AY4 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AL157813.1-201ENST00000612996 587 ntBASIC15.63■□□□□ 0.09
TTC28Q96AY4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.63■□□□□ 0.09
TTC28Q96AY4 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 PUDPP3-201ENST00000445368 636 ntBASIC15.63■□□□□ 0.09
TTC28Q96AY4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AC005041.3-201ENST00000606287 649 ntBASIC15.63■□□□□ 0.09
TTC28Q96AY4 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AC016396.2-201ENST00000562575 1417 ntBASIC15.63■□□□□ 0.09
TTC28Q96AY4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.63■□□□□ 0.09
TTC28Q96AY4 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TTC28Q96AY4 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 AF274858.1-201ENST00000406288 372 ntBASIC15.62■□□□□ 0.09
TTC28Q96AY4 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 AC083801.1-201ENST00000491689 358 ntBASIC15.62■□□□□ 0.09
TTC28Q96AY4 NAT9-220ENST00000582870 896 ntTSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC15.62■□□□□ 0.09
TTC28Q96AY4 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TTC28Q96AY4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC090857.1-201ENST00000527400 390 ntBASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC15.61■□□□□ 0.09
TTC28Q96AY4 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC15.61■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms