Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.27■□□□□ 0.2
NPAS3Q8IXF0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
NPAS3Q8IXF0 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TNRC18P3-201ENST00000441896 2691 ntBASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 CNN2P8-201ENST00000421872 913 ntBASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 AP001582.1-201ENST00000525856 295 ntBASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 AC243960.2-201ENST00000600996 747 ntBASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
NPAS3Q8IXF0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 AC025279.2-201ENST00000569730 653 ntBASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 AC006449.6-201ENST00000612330 2296 ntBASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.25■□□□□ 0.19
NPAS3Q8IXF0 PCDHB19P-201ENST00000570871 2371 ntBASIC16.24■□□□□ 0.19
NPAS3Q8IXF0 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPAS3Q8IXF0 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
NPAS3Q8IXF0 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.24■□□□□ 0.19
NPAS3Q8IXF0 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPAS3Q8IXF0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
NPAS3Q8IXF0 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms