Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC15.56■□□□□ 0.08
CXCL12P48061 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CXCL12P48061 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
CXCL12P48061 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC15.56■□□□□ 0.08
CXCL12P48061 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.56■□□□□ 0.08
CXCL12P48061 RNF165-205ENST00000588679 2904 ntBASIC15.56■□□□□ 0.08
CXCL12P48061 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.56■□□□□ 0.08
CXCL12P48061 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CXCL12P48061 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
CXCL12P48061 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.55■□□□□ 0.08
CXCL12P48061 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
CXCL12P48061 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 AC005052.1-201ENST00000625181 2492 ntBASIC15.55■□□□□ 0.08
CXCL12P48061 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CXCL12P48061 AP001094.4-201ENST00000579008 2176 ntBASIC15.55■□□□□ 0.08
CXCL12P48061 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.55■□□□□ 0.08
CXCL12P48061 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
CXCL12P48061 RNU1-114P-201ENST00000365297 166 ntBASIC15.55■□□□□ 0.08
CXCL12P48061 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
CXCL12P48061 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CXCL12P48061 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC15.55■□□□□ 0.08
CXCL12P48061 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC15.55■□□□□ 0.08
CXCL12P48061 IMP3P2-201ENST00000489760 475 ntBASIC15.55■□□□□ 0.08
CXCL12P48061 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.55■□□□□ 0.08
CXCL12P48061 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 AC097724.1-201ENST00000609581 426 ntBASIC15.55■□□□□ 0.08
CXCL12P48061 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC15.55■□□□□ 0.08
CXCL12P48061 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.55■□□□□ 0.08
CXCL12P48061 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CXCL12P48061 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 LRRC59-203ENST00000576448 1531 ntBASIC15.54■□□□□ 0.08
CXCL12P48061 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 TISP43-201ENST00000409793 538 ntTSL 4 BASIC15.54■□□□□ 0.08
CXCL12P48061 AL008707.1-201ENST00000422498 534 ntBASIC15.54■□□□□ 0.08
CXCL12P48061 AC016700.1-201ENST00000429424 312 ntBASIC15.54■□□□□ 0.08
CXCL12P48061 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 MAGEA5-201ENST00000446757 942 ntBASIC15.54■□□□□ 0.08
CXCL12P48061 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 RN7SL720P-201ENST00000488178 304 ntBASIC15.54■□□□□ 0.08
CXCL12P48061 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC15.54■□□□□ 0.08
CXCL12P48061 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.54■□□□□ 0.08
CXCL12P48061 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.54■□□□□ 0.08
CXCL12P48061 TBCB-211ENST00000589996 724 ntTSL 3 BASIC15.54■□□□□ 0.08
CXCL12P48061 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.54■□□□□ 0.08
CXCL12P48061 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC15.54■□□□□ 0.08
CXCL12P48061 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.54■□□□□ 0.08
CXCL12P48061 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CXCL12P48061 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms