Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC25.83■■□□□ 1.72
CUX1P39880 PDIA3P2-201ENST00000428073 158 ntBASIC25.83■■□□□ 1.72
CUX1P39880 RNMTL1P1-201ENST00000454103 560 ntBASIC25.83■■□□□ 1.72
CUX1P39880 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC25.83■■□□□ 1.72
CUX1P39880 TALDO1-203ENST00000528097 1231 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
CUX1P39880 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC25.83■■□□□ 1.72
CUX1P39880 AL358472.3-201ENST00000608147 415 ntBASIC25.83■■□□□ 1.72
CUX1P39880 AC068587.8-201ENST00000641239 219 ntBASIC25.83■■□□□ 1.72
CUX1P39880 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
CUX1P39880 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.72
CUX1P39880 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
CUX1P39880 KRT8P29-201ENST00000420409 1371 ntBASIC25.82■■□□□ 1.72
CUX1P39880 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC25.82■■□□□ 1.72
CUX1P39880 AC055811.4-201ENST00000624039 1754 ntBASIC25.82■■□□□ 1.72
CUX1P39880 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
CUX1P39880 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC25.82■■□□□ 1.72
CUX1P39880 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC25.82■■□□□ 1.72
CUX1P39880 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC25.82■■□□□ 1.72
CUX1P39880 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC25.82■■□□□ 1.72
CUX1P39880 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC25.82■■□□□ 1.72
CUX1P39880 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC25.82■■□□□ 1.72
CUX1P39880 MIR4683-201ENST00000579659 81 ntBASIC25.82■■□□□ 1.72
CUX1P39880 RN7SL555P-201ENST00000584742 339 ntBASIC25.82■■□□□ 1.72
CUX1P39880 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 AC012313.1-201ENST00000593393 3059 ntBASIC25.82■■□□□ 1.72
CUX1P39880 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
CUX1P39880 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC25.81■■□□□ 1.72
CUX1P39880 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC25.81■■□□□ 1.72
CUX1P39880 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC25.81■■□□□ 1.72
CUX1P39880 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC25.81■■□□□ 1.72
CUX1P39880 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC25.81■■□□□ 1.72
CUX1P39880 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC25.81■■□□□ 1.72
CUX1P39880 AL133466.1-201ENST00000447582 150 ntBASIC25.81■■□□□ 1.72
CUX1P39880 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC25.81■■□□□ 1.72
CUX1P39880 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC25.81■■□□□ 1.72
CUX1P39880 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC25.81■■□□□ 1.72
CUX1P39880 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
CUX1P39880 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
CUX1P39880 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 CEP164P1-201ENST00000455142 418 ntBASIC25.8■■□□□ 1.72
CUX1P39880 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC25.8■■□□□ 1.72
CUX1P39880 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC25.8■■□□□ 1.72
CUX1P39880 MESTP3-201ENST00000503460 968 ntBASIC25.8■■□□□ 1.72
CUX1P39880 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC25.8■■□□□ 1.72
CUX1P39880 AL160314.3-201ENST00000556041 767 ntBASIC25.8■■□□□ 1.72
CUX1P39880 AL161670.2-201ENST00000557650 1227 ntBASIC25.8■■□□□ 1.72
CUX1P39880 SYT17-208ENST00000568433 812 ntTSL 3 BASIC25.8■■□□□ 1.72
CUX1P39880 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
CUX1P39880 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC25.8■■□□□ 1.72
CUX1P39880 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
CUX1P39880 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC25.8■■□□□ 1.72
CUX1P39880 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
CUX1P39880 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
CUX1P39880 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
CUX1P39880 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC25.8■■□□□ 1.72
CUX1P39880 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
CUX1P39880 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC25.79■■□□□ 1.72
CUX1P39880 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC25.79■■□□□ 1.72
CUX1P39880 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
CUX1P39880 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC25.79■■□□□ 1.72
CUX1P39880 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC25.79■■□□□ 1.72
CUX1P39880 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
CUX1P39880 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 MAGEA5-201ENST00000446757 942 ntBASIC25.79■■□□□ 1.72
CUX1P39880 AC005740.2-201ENST00000511085 419 ntBASIC25.79■■□□□ 1.72
CUX1P39880 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC25.79■■□□□ 1.72
CUX1P39880 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
CUX1P39880 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC25.79■■□□□ 1.72
CUX1P39880 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 AL162426.1-201ENST00000624141 743 ntBASIC25.79■■□□□ 1.72
CUX1P39880 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
CUX1P39880 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC25.79■■□□□ 1.72
CUX1P39880 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC25.79■■□□□ 1.72
CUX1P39880 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms