Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AC091951.1-201ENST00000512854 2465 ntBASIC12.11□□□□□ -0.47
HLA-DMBP28068 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 NEK7-201ENST00000367383 586 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CEND1P1-201ENST00000451006 455 ntBASIC12.11□□□□□ -0.47
HLA-DMBP28068 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 RARRES2P8-201ENST00000566335 367 ntBASIC12.11□□□□□ -0.47
HLA-DMBP28068 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 MIR4469-201ENST00000583919 79 ntBASIC12.11□□□□□ -0.47
HLA-DMBP28068 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AP001160.2-201ENST00000596071 487 ntBASIC12.11□□□□□ -0.47
HLA-DMBP28068 AL596442.2-201ENST00000610240 980 ntBASIC12.11□□□□□ -0.47
HLA-DMBP28068 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CELP-203ENST00000624767 2414 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC12.11□□□□□ -0.47
HLA-DMBP28068 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
HLA-DMBP28068 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 BNIP3P1-202ENST00000550043 1585 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
HLA-DMBP28068 FAM58CP-201ENST00000435741 640 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 MKNK2P1-201ENST00000437526 628 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC12.1□□□□□ -0.47
HLA-DMBP28068 DNAJB3-202ENST00000449667 1266 ntBASIC12.1□□□□□ -0.47
HLA-DMBP28068 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms