Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AL391005.1-201ENST00000623953 2435 ntBASIC14.88□□□□□ -0.03
COL5A1P20908 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.88□□□□□ -0.03
COL5A1P20908 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL5A1P20908 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 YIPF7-201ENST00000332990 937 ntTSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 TMEM198B-204ENST00000484016 896 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 AC013355.1-201ENST00000562625 723 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC14.87□□□□□ -0.03
COL5A1P20908 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
COL5A1P20908 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.87□□□□□ -0.03
COL5A1P20908 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 LINC02447-202ENST00000501888 2146 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.87□□□□□ -0.03
COL5A1P20908 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.87□□□□□ -0.03
COL5A1P20908 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL5A1P20908 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL5A1P20908 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL5A1P20908 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC14.87□□□□□ -0.03
COL5A1P20908 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
COL5A1P20908 AC016700.1-201ENST00000429424 312 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 AC022217.1-201ENST00000521069 738 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 AC005730.2-201ENST00000564549 1184 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 PPY2P-201ENST00000582808 702 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL5A1P20908 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.87□□□□□ -0.03
COL5A1P20908 AL603764.1-201ENST00000636452 321 ntBASIC14.87□□□□□ -0.03
COL5A1P20908 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.87□□□□□ -0.03
COL5A1P20908 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL5A1P20908 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 RGS5-214ENST00000429865 754 ntTSL 3 BASIC14.86□□□□□ -0.03
COL5A1P20908 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC14.86□□□□□ -0.03
COL5A1P20908 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 MIR4313-201ENST00000580760 101 ntBASIC14.86□□□□□ -0.03
COL5A1P20908 NAT9-224ENST00000583757 583 ntTSL 3 BASIC14.86□□□□□ -0.03
COL5A1P20908 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.86□□□□□ -0.03
COL5A1P20908 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.86□□□□□ -0.03
COL5A1P20908 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
COL5A1P20908 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC14.86□□□□□ -0.03
COL5A1P20908 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL5A1P20908 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC14.85□□□□□ -0.03
COL5A1P20908 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC14.85□□□□□ -0.03
COL5A1P20908 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
COL5A1P20908 FNTAP2-201ENST00000430308 634 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 AC004066.1-201ENST00000502488 802 ntBASIC14.85□□□□□ -0.03
COL5A1P20908 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
COL5A1P20908 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms