Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.98■□□□□ 0.15
VIMP08670 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.98■□□□□ 0.15
VIMP08670 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 B3GNT7-201ENST00000287590 3706 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.98■□□□□ 0.15
VIMP08670 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.98■□□□□ 0.15
VIMP08670 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
VIMP08670 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
VIMP08670 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
VIMP08670 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.97■□□□□ 0.15
VIMP08670 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
VIMP08670 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 ABR-205ENST00000544583 5595 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 PTCHD3P3-201ENST00000403073 906 ntBASIC15.97■□□□□ 0.15
VIMP08670 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC15.97■□□□□ 0.15
VIMP08670 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 AL121672.3-201ENST00000608644 468 ntBASIC15.97■□□□□ 0.15
VIMP08670 AL022326.1-202ENST00000641533 845 ntBASIC15.97■□□□□ 0.15
VIMP08670 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VIMP08670 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VIMP08670 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC15.97■□□□□ 0.15
VIMP08670 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
VIMP08670 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
VIMP08670 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 KRT18P1-202ENST00000452408 1331 ntBASIC15.96■□□□□ 0.15
VIMP08670 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.96■□□□□ 0.15
VIMP08670 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.96■□□□□ 0.15
VIMP08670 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
VIMP08670 AL589182.2-201ENST00000619332 1049 ntBASIC15.96■□□□□ 0.15
VIMP08670 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC15.96■□□□□ 0.15
VIMP08670 DKFZP434A062-201ENST00000573103 5021 ntBASIC15.96■□□□□ 0.15
VIMP08670 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
VIMP08670 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms