Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MIR6805-201ENST00000615055 62 ntBASIC20.51■□□□□ 0.87
COL3A1P02461 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL3A1P02461 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL3A1P02461 SSR4P1-203ENST00000599569 2260 ntBASIC20.51■□□□□ 0.87
COL3A1P02461 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL3A1P02461 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.51■□□□□ 0.87
COL3A1P02461 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL3A1P02461 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
COL3A1P02461 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC20.51■□□□□ 0.87
COL3A1P02461 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
COL3A1P02461 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC20.51■□□□□ 0.87
COL3A1P02461 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL3A1P02461 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC20.51■□□□□ 0.87
COL3A1P02461 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC20.51■□□□□ 0.87
COL3A1P02461 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL3A1P02461 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC20.5■□□□□ 0.87
COL3A1P02461 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC20.5■□□□□ 0.87
COL3A1P02461 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.5■□□□□ 0.87
COL3A1P02461 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC20.5■□□□□ 0.87
COL3A1P02461 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC20.5■□□□□ 0.87
COL3A1P02461 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.5■□□□□ 0.87
COL3A1P02461 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
COL3A1P02461 KRT8P35-201ENST00000483942 1338 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 MST1L-201ENST00000442552 2185 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 CICP11-201ENST00000434745 2827 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
COL3A1P02461 MIR658-201ENST00000385210 100 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 AC099336.1-201ENST00000417053 1171 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL3A1P02461 AC004066.1-201ENST00000502488 802 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 AP003171.2-201ENST00000528208 925 ntBASIC20.5■□□□□ 0.87
COL3A1P02461 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.5■□□□□ 0.87
COL3A1P02461 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.5■□□□□ 0.87
COL3A1P02461 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.5■□□□□ 0.87
COL3A1P02461 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC20.5■□□□□ 0.87
COL3A1P02461 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL3A1P02461 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL3A1P02461 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
COL3A1P02461 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL3A1P02461 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.49■□□□□ 0.87
COL3A1P02461 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC20.49■□□□□ 0.87
COL3A1P02461 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
COL3A1P02461 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC20.49■□□□□ 0.87
COL3A1P02461 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL3A1P02461 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL3A1P02461 ZBTB12BP-201ENST00000314232 1122 ntBASIC20.49■□□□□ 0.87
COL3A1P02461 GUK1-206ENST00000366723 845 ntTSL 5 BASIC20.49■□□□□ 0.87
COL3A1P02461 BOLA2P3-201ENST00000404566 256 ntBASIC20.49■□□□□ 0.87
COL3A1P02461 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC20.49■□□□□ 0.87
COL3A1P02461 CNN2P8-201ENST00000421872 913 ntBASIC20.49■□□□□ 0.87
COL3A1P02461 MFF-223ENST00000524634 647 ntTSL 2 BASIC20.49■□□□□ 0.87
COL3A1P02461 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
COL3A1P02461 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC20.49■□□□□ 0.87
COL3A1P02461 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC20.48■□□□□ 0.87
COL3A1P02461 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
COL3A1P02461 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC20.48■□□□□ 0.87
COL3A1P02461 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC20.48■□□□□ 0.87
COL3A1P02461 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC20.48■□□□□ 0.87
COL3A1P02461 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 LBX2-201ENST00000341396 886 ntTSL 3 BASIC20.48■□□□□ 0.87
COL3A1P02461 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL3A1P02461 RPL7P3-201ENST00000441388 714 ntBASIC20.48■□□□□ 0.87
COL3A1P02461 KRT223P-202ENST00000449164 1292 ntBASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms