Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PPP3CA-208ENST00000525819 569 ntTSL 43.89□□□□□ -1.796e-6■■■■■ 103.4
SF3B1O75533 KIF15-202ENST00000422209 691 ntTSL 33.89□□□□□ -1.796e-6■■■■■ 103.4
SF3B1O75533 USP53-205ENST00000509769 4803 ntTSL 1 (best)3.78□□□□□ -1.81e-8■■■■■ 103.4
SF3B1O75533 GTF2H3-213ENST00000543415 907 ntTSL 53.68□□□□□ -1.821e-8■■■■■ 103.4
SF3B1O75533 CEP85L-209ENST00000476150 620 ntTSL 43.63□□□□□ -1.831e-8■■■■■ 103.4
SF3B1O75533 EFCAB2-204ENST00000391837 738 ntTSL 53.63□□□□□ -1.836e-6■■■■■ 103.4
SF3B1O75533 BABAM2-211ENST00000604932 500 ntTSL 23.52□□□□□ -1.856e-6■■■■■ 103.4
SF3B1O75533 REV1-205ENST00000450415 577 ntTSL 43.48□□□□□ -1.856e-6■■■■■ 103.4
SF3B1O75533 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC3.4□□□□□ -1.871e-8■■■■■ 103.4
SF3B1O75533 QKI-213ENST00000544361 613 ntTSL 53.39□□□□□ -1.875e-6■■■■■ 103.4
SF3B1O75533 CYP51A1-203ENST00000435873 556 ntTSL 43.39□□□□□ -1.876e-6■■■■■ 103.4
SF3B1O75533 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.34□□□□□ -1.876e-6■■■■■ 103.4
SF3B1O75533 IL23R-204ENST00000473881 1507 ntTSL 1 (best)3.33□□□□□ -1.886e-6■■■■■ 103.4
SF3B1O75533 ATP6V1D-202ENST00000553408 678 ntTSL 33.32□□□□□ -1.886e-6■■■■■ 103.4
SF3B1O75533 GAB1-213ENST00000515366 582 ntTSL 43.27□□□□□ -1.895e-6■■■■■ 103.4
SF3B1O75533 TRIQK-209ENST00000519969 555 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.896e-6■■■■■ 103.4
SF3B1O75533 DDHD1-207ENST00000556027 3951 ntTSL 1 (best)3.24□□□□□ -1.896e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-207ENST00000464223 164 ntTSL 1 (best)3.18□□□□□ -1.96e-6■■■■■ 103.4
SF3B1O75533 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.15□□□□□ -1.911e-10■■■■■ 103.4
SF3B1O75533 CAPZA2-204ENST00000426421 1214 ntTSL 53.12□□□□□ -1.916e-6■■■■■ 103.4
SF3B1O75533 UBE2J2-213ENST00000471154 336 ntTSL 53.04□□□□□ -1.922e-12■■■■■ 103.4
SF3B1O75533 CAMSAP1-204ENST00000460094 371 ntTSL 23.02□□□□□ -1.936e-6■■■■■ 103.4
SF3B1O75533 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.936e-6■■■■■ 103.4
SF3B1O75533 TRAPPC8-205ENST00000578658 563 ntTSL 52.99□□□□□ -1.936e-6■■■■■ 103.4
SF3B1O75533 ATF7IP-220ENST00000542991 574 ntTSL 42.97□□□□□ -1.936e-6■■■■■ 103.4
SF3B1O75533 TRIQK-218ENST00000523375 646 ntTSL 32.92□□□□□ -1.946e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-205ENST00000449080 814 ntTSL 52.85□□□□□ -1.956e-6■■■■■ 103.4
SF3B1O75533 LINC-PINT-207ENST00000443623 453 ntTSL 32.83□□□□□ -1.966e-6■■■■■ 103.4
SF3B1O75533 GTF2H3-209ENST00000542279 552 ntTSL 52.8□□□□□ -1.961e-8■■■■■ 103.4
SF3B1O75533 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC2.76□□□□□ -1.976e-6■■■■■ 103.4
SF3B1O75533 ANKRD28-207ENST00000462657 581 ntTSL 32.73□□□□□ -1.971e-8■■■■■ 103.4
SF3B1O75533 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.68□□□□□ -1.986e-6■■■■■ 103.4
SF3B1O75533 ALG13-212ENST00000474121 436 ntTSL 32.62□□□□□ -1.996e-6■■■■■ 103.4
SF3B1O75533 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC2.59□□□□□ -26e-6■■■■■ 103.4
SF3B1O75533 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -26e-6■■■■■ 103.4
SF3B1O75533 REV1-212ENST00000482595 484 ntTSL 52.56□□□□□ -26e-6■■■■■ 103.4
SF3B1O75533 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.53□□□□□ -21e-10■■■■■ 103.4
SF3B1O75533 PTPRC-205ENST00000391970 408 ntTSL 1 (best)2.4□□□□□ -2.031e-8■■■■■ 103.4
SF3B1O75533 PTPRC-207ENST00000418674 462 ntTSL 22.39□□□□□ -2.031e-8■■■■■ 103.4
SF3B1O75533 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.38□□□□□ -2.036e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC2.35□□□□□ -2.036e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-208ENST00000464669 898 ntTSL 22.35□□□□□ -2.036e-6■■■■■ 103.4
SF3B1O75533 CAPZA2-203ENST00000417431 517 ntTSL 32.31□□□□□ -2.046e-6■■■■■ 103.4
SF3B1O75533 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.27□□□□□ -2.051e-8■■■■■ 103.4
SF3B1O75533 UBA5-206ENST00000468227 3902 ntTSL 22.27□□□□□ -2.051e-8■■■■■ 103.4
SF3B1O75533 TRIQK-217ENST00000523060 550 ntTSL 22.27□□□□□ -2.056e-6■■■■■ 103.4
SF3B1O75533 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.22□□□□□ -2.056e-6■■■■■ 103.4
SF3B1O75533 EHMT1-239ENST00000637287 100 ntTSL 52.21□□□□□ -2.066e-6■■■■■ 103.4
SF3B1O75533 FAM135A-204ENST00000393299 1780 ntTSL 22.08□□□□□ -2.081e-8■■■■■ 103.4
SF3B1O75533 GTF2H3-205ENST00000538533 555 ntTSL 52.02□□□□□ -2.091e-8■■■■■ 103.4
SF3B1O75533 ERI3-206ENST00000462341 320 ntTSL 32.02□□□□□ -2.091e-8■■■■■ 103.4
SF3B1O75533 FRYL-213ENST00000511343 300 ntTSL 31.92□□□□□ -2.11e-8■■■■■ 103.4
SF3B1O75533 TRIQK-205ENST00000518400 617 ntTSL 31.92□□□□□ -2.16e-6■■■■■ 103.4
SF3B1O75533 BABAM2-210ENST00000603461 494 ntTSL 31.91□□□□□ -2.16e-6■■■■■ 103.4
SF3B1O75533 ALG13-206ENST00000461669 699 ntTSL 31.83□□□□□ -2.126e-6■■■■■ 103.4
SF3B1O75533 PTPRC-208ENST00000427110 264 ntTSL 1 (best)1.8□□□□□ -2.121e-8■■■■■ 103.4
SF3B1O75533 TRIQK-210ENST00000520384 556 ntTSL 51.63□□□□□ -2.156e-6■■■■■ 103.4
SF3B1O75533 FAM135A-201ENST00000194672 5198 ntTSL 51.62□□□□□ -2.151e-8■■■■■ 103.4
SF3B1O75533 CHD9-204ENST00000561869 720 ntTSL 21.55□□□□□ -2.161e-8■■■■■ 103.4
SF3B1O75533 MAP2K4-209ENST00000582897 482 ntTSL 51.51□□□□□ -2.176e-6■■■■■ 103.4
SF3B1O75533 FAM76B-203ENST00000535919 451 ntTSL 31.41□□□□□ -2.181e-8■■■■■ 103.4
SF3B1O75533 NAA16-209ENST00000495148 374 ntTSL 31.35□□□□□ -2.191e-8■■■■■ 103.4
SF3B1O75533 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.85□□□□□ -2.271e-8■■■■■ 103.4
SF3B1O75533 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.215e-6■■■■■ 103.3
SF3B1O75533 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.985e-6■■■■■ 103.3
SF3B1O75533 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.645e-6■■■■■ 103.3
SF3B1O75533 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.135e-6■■■■■ 103.3
SF3B1O75533 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.055e-6■■■■■ 103.3
SF3B1O75533 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.035e-6■■■■■ 103.3
SF3B1O75533 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.015e-6■■■■■ 103.3
SF3B1O75533 AGAP1-208ENST00000448025 757 ntTSL 510.04□□□□□ -0.83e-6■■■■■ 103.3
SF3B1O75533 WDPCP-201ENST00000272321 3392 ntAPPRIS P3 TSL 1 (best) BASIC11.45□□□□□ -0.582e-6■■■■■ 103.2
SF3B1O75533 WDPCP-206ENST00000409562 3544 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.982e-6■■■■■ 103.2
SF3B1O75533 RELT-205ENST00000544075 744 ntTSL 324.13■■□□□ 1.455e-6■■■■■ 103.2
SF3B1O75533 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.935e-6■■■■■ 103.2
SF3B1O75533 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.235e-6■■■■■ 103.2
SF3B1O75533 SAP30BP-212ENST00000580322 1558 ntTSL 523.81■■□□□ 1.46e-7■■■■■ 103.2
SF3B1O75533 SAP30BP-213ENST00000580484 686 ntTSL 320.83■□□□□ 0.936e-7■■■■■ 103.2
SF3B1O75533 SAP30BP-201ENST00000293208 1272 ntTSL 518.73■□□□□ 0.596e-7■■■■■ 103.2
SF3B1O75533 SAP30BP-221ENST00000583536 1000 ntTSL 317.83■□□□□ 0.446e-7■■■■■ 103.2
SF3B1O75533 SAP30BP-217ENST00000582022 2409 ntTSL 1 (best)15.3■□□□□ 0.046e-7■■■■■ 103.2
SF3B1O75533 SAP30BP-202ENST00000355423 2439 ntTSL 2 BASIC14.04□□□□□ -0.166e-7■■■■■ 103.2
SF3B1O75533 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.26e-7■■■■■ 103.2
SF3B1O75533 AKT1-212ENST00000555380 534 ntTSL 412.43□□□□□ -0.426e-6■■■■■ 103.2
SF3B1O75533 SAP30BP-203ENST00000542343 1011 ntTSL 211.34□□□□□ -0.596e-7■■■■■ 103.2
SF3B1O75533 ACTN1-208ENST00000553370 605 ntTSL 310.98□□□□□ -0.656e-6■■■■■ 103.2
SF3B1O75533 CCNY-206ENST00000470025 346 ntTSL 54.48□□□□□ -1.696e-6■■■■■ 103.2
SF3B1O75533 LUC7L-218ENST00000494366 668 ntTSL 320.37■□□□□ 0.851e-6■■■■■ 103.1
SF3B1O75533 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.42■□□□□ 0.74e-6■■■■■ 103.1
SF3B1O75533 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.13e-6■■■■■ 103.1
SF3B1O75533 AC104041.1-202ENST00000560097 566 ntTSL 4 BASIC12.77□□□□□ -0.374e-6■■■■■ 103.1
SF3B1O75533 PLEC-208ENST00000436759 14787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.422e-6■■■■■ 103.1
SF3B1O75533 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC17.18■□□□□ 0.341e-8■■■■■ 103.1
SF3B1O75533 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.224e-6■■■■■ 103
SF3B1O75533 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.144e-6■■■■■ 103
SF3B1O75533 FHIT-204ENST00000468189 1634 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.374e-6■■■■■ 103
SF3B1O75533 FHIT-206ENST00000488467 601 ntTSL 312.12□□□□□ -0.474e-6■■■■■ 103
SF3B1O75533 NUMA1-213ENST00000537217 2331 ntAPPRIS ALT2 TSL 1 (best)18.01■□□□□ 0.474e-6■■■■■ 103
SF3B1O75533 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.014e-6■■■■■ 103
SF3B1O75533 NUMA1-203ENST00000366394 539 ntAPPRIS ALT2 TSL 514.5□□□□□ -0.094e-6■■■■■ 103
Retrieved 100 of 46,956 protein–RNA pairs in 1447.1 ms