Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC16.24■□□□□ 0.19
CDCA3Q99618 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.24■□□□□ 0.19
CDCA3Q99618 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.24■□□□□ 0.19
CDCA3Q99618 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.24■□□□□ 0.19
CDCA3Q99618 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 MIR4722-201ENST00000578292 60 ntBASIC16.24■□□□□ 0.19
CDCA3Q99618 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.24■□□□□ 0.19
CDCA3Q99618 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 SNX1-214ENST00000625244 324 ntTSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CDCA3Q99618 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.24■□□□□ 0.19
CDCA3Q99618 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC16.24■□□□□ 0.19
CDCA3Q99618 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
CDCA3Q99618 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 AC006449.6-201ENST00000612330 2296 ntBASIC16.24■□□□□ 0.19
CDCA3Q99618 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDCA3Q99618 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.23■□□□□ 0.19
CDCA3Q99618 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 AC148477.4-201ENST00000613430 1793 ntBASIC16.23■□□□□ 0.19
CDCA3Q99618 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDCA3Q99618 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 AL139094.1-201ENST00000405549 1188 ntBASIC16.23■□□□□ 0.19
CDCA3Q99618 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC16.23■□□□□ 0.19
CDCA3Q99618 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC16.23■□□□□ 0.19
CDCA3Q99618 RN7SL720P-201ENST00000488178 304 ntBASIC16.23■□□□□ 0.19
CDCA3Q99618 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.23■□□□□ 0.19
CDCA3Q99618 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.23■□□□□ 0.19
CDCA3Q99618 ZACNP1-201ENST00000612259 710 ntBASIC16.23■□□□□ 0.19
CDCA3Q99618 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDCA3Q99618 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDCA3Q99618 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.23■□□□□ 0.19
CDCA3Q99618 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDCA3Q99618 OR6D1P-203ENST00000641209 4860 ntBASIC16.23■□□□□ 0.19
CDCA3Q99618 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC16.23■□□□□ 0.19
CDCA3Q99618 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.22■□□□□ 0.19
CDCA3Q99618 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CDCA3Q99618 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.22■□□□□ 0.19
CDCA3Q99618 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.22■□□□□ 0.19
CDCA3Q99618 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC16.22■□□□□ 0.19
CDCA3Q99618 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.22■□□□□ 0.19
CDCA3Q99618 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CDCA3Q99618 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CDCA3Q99618 CYP46A4P-201ENST00000414953 267 ntBASIC16.22■□□□□ 0.19
CDCA3Q99618 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.22■□□□□ 0.19
CDCA3Q99618 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.22■□□□□ 0.19
CDCA3Q99618 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.22■□□□□ 0.19
CDCA3Q99618 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.22■□□□□ 0.19
CDCA3Q99618 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.22■□□□□ 0.19
CDCA3Q99618 AC025181.2-201ENST00000606994 802 ntBASIC16.22■□□□□ 0.19
CDCA3Q99618 AP001505.2-201ENST00000616815 443 ntBASIC16.22■□□□□ 0.19
CDCA3Q99618 AL603764.1-201ENST00000636452 321 ntBASIC16.22■□□□□ 0.19
CDCA3Q99618 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.22■□□□□ 0.19
CDCA3Q99618 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.22■□□□□ 0.19
CDCA3Q99618 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
CDCA3Q99618 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
CDCA3Q99618 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 59.3 ms